PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462917585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | Trihelix | ||||||||
Protein Properties | Length: 253aa MW: 30081.7 Da PI: 5.4242 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 25.1 | 4.6e-08 | 16 | 62 | 1 | 46 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergfers 46 +W+ qe+++Li+ar e+e++ + ++++k+ We+v++++re +++++ 462917585 16 QWSTQETRELIAARGELEREAVAaRRSAKTMWEAVAARIREVQVQVE 62 7****************98877526899**************99984 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MMEAGGAGGR DERVPQWSTQ ETRELIAARG ELEREAVAAR RSAKTMWEAV AARIREVQVQ 60 VEEPRQPLQD NGRQCPFFEE LHAVFTERAR NMQRQLLESE SGTYVKKKLK RASGNRSSEE 120 SDDEEDCGEE TEEDKPTHIR KRRAEDKKQQ PRRMPEKSRA GTSSIHELLQ DFLIQQQRID 180 IQWRETMEKR AQERLVYEQE WRQSMQKLER ERLMLEQSWM EREEQRRMNE EARAEKRDAL 240 LTTLLNKLLQ EDL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462917585 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448463.1 | 1e-106 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A059Q3B0 | 1e-113 | A0A059Q3B0_9POAL; Transcription factor | ||||
STRING | Pavir.J40572.1.p | 1e-110 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10688 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 1e-14 | Trihelix family protein |