PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462916094 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27026.9 Da PI: 5.2078 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 7e-19 | 125 | 171 | 3 | 53 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 ++GVr+++ +g+W+AeIrdp+ r +r +lg+f+taeeAa+a+++a+++ 462916094 125 FRGVRQRP-WGKWAAEIRDPR----RaARKWLGTFDTAEEAARAYDRAALEA 171 79******.**********82....48**********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 7.19E-19 | 124 | 190 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-32 | 124 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.327 | 124 | 189 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-24 | 124 | 169 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-13 | 125 | 170 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-28 | 125 | 190 | No hit | No description |
PRINTS | PR00367 | 3.8E-11 | 125 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-11 | 147 | 163 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-5 | 170 | 189 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 249 aa Download sequence Send to blast |
MTKKLVPTVE TKQDRKAQFD NQGIQVSNHA DGRTISQEQE HNIIVAALQH VLSGYTTAPP 60 EVVAVASGDA CAVCGIDGCL GCDFFADGHQ AAGGASEVNY GTASVAPGAT GAEKRQRRRR 120 KKNMFRGVRQ RPWGKWAAEI RDPRRAARKW LGTFDTAEEA ARAYDRAALE AYDRAALEFR 180 GPRARLNFPY GQQEEPLPSG GAEESAPGEW QLGGGADGGE GDELWDGFQD LMKLDETDFW 240 FPPFPGAAS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-18 | 121 | 189 | 2 | 63 | ATERF1 |
3gcc_A | 4e-18 | 121 | 189 | 2 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 113 | 121 | KRQRRRRKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462916094 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU964453 | 1e-51 | EU964453.1 Zea mays clone 278992 AP2 domain containing protein mRNA, complete cds. | |||
GenBank | KJ727527 | 1e-51 | KJ727527.1 Zea mays clone pUT5387 AP2-EREBP transcription factor (EREB172) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957018.1 | 2e-82 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 4e-30 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1E5WBD2 | 7e-86 | A0A1E5WBD2_9POAL; Uncharacterized protein | ||||
STRING | Si030856m | 8e-82 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34410.1 | 6e-30 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|