PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462915712
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family WRKY
Protein Properties Length: 433aa    MW: 45424.2 Da    PI: 4.6291
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462915712genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.14.8e-3052110259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 D ++WrKYGqK++kgs++pr+YYrC++  +C+++k+ver++ dp ++++tY+geH h+
  462915712  52 ADLWAWRKYGQKPIKGSPYPRGYYRCSTDkECRARKQVERCRADPAMLIVTYTGEHSHP 110
                699***********************9998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3046112IPR003657WRKY domain
SuperFamilySSF1182907.85E-2650112IPR003657WRKY domain
SMARTSM007748.1E-3751111IPR003657WRKY domain
PROSITE profilePS5081131.12353112IPR003657WRKY domain
PfamPF031063.7E-2553110IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
PEAAPQPSSP RTDEAPAKPR RGGGGPTRSK RKSKKSQVSK EVTRVPAGGP SADLWAWRKY  60
GQKPIKGSPY PRGYYRCSTD KECRARKQVE RCRADPAMLI VTYTGEHSHP VPLHRNSLAG  120
TTRTKPSQHQ QQSVSSAEET SQAQQQQAQS ESATGLSSAP SPGDDSANNK PQSSPASGCA  180
SGLSPGTPLR SPSVSVGVES YEDEEEDDDT LAHSHPVPLH RNSLAGTTRT KPSQHQQQSV  240
SSAEETSQAQ QQQAQSESAT GLSSAPSPGD DSANNKPQSS PASGCASGLS PGTPLRSPSV  300
SVGVESYEDD EEDDDTVAIR LLLEDTDMGR AETDDALLFL QPDEPIPGMG NDAAMLYPND  360
KPNEPGPGPV SSGGAEDTML FPNPGDEPQP TTVSASITTN GGDSTPPAVM NFAEDKFSIS  420
GLSAWEAASG WGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-1940112679Disease resistance protein RRS1
5w3x_D4e-1940112679Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462915712
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0686091e-73BT068609.2 Zea mays full-length cDNA clone ZM_BFb0349G13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700890.12e-65WRKY transcription factor 22
TrEMBLA0A1E5VAE72e-66A0A1E5VAE7_9POAL; WRKY transcription factor 22
STRINGSi008820m8e-65(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-41WRKY family protein