PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462913689 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | B3 | ||||||||
Protein Properties | Length: 557aa MW: 62862 Da PI: 6.0779 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.6 | 9.6e-18 | 9 | 91 | 2 | 91 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 fk + +++g +++p kf+e++++k + + l+ + g+ W v + +k ++ +l++GW++Fvka++L+e+D ++F+ +g+s+fe 462913689 9 FKLM--TGDFAKG-ISIPEKFVENFNEK--ITEEFNLKVPGGEAWHVSV--KKDADELFLKSGWENFVKAHELQENDLLIFTCSGNSSFE 91 5555..4445555.9*******888655..5568***************..*******************************99999985 PP | |||||||
2 | B3 | 71.4 | 1.2e-22 | 233 | 325 | 1 | 98 |
EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ff+vl s+v ++ + l++p kf+++++gk +k++ l+ +sg++W+v + +k ++ +l++GW++Fvka++L+e+D +vF+++g+s+f v +f+ 462913689 233 FFTVLQMSHVRRNnNFLSIPEKFVNNFNGK--ITKEVNLKAPSGETWQVGV--NKDADELFLKSGWEDFVKAHELQENDLLVFTFSGNSSF--EVLIFE 325 78888888888874678*******888877..6779***************..**********************************9999..777776 PP | |||||||
3 | B3 | 36.7 | 7.3e-12 | 449 | 547 | 1 | 99 |
EEEE-..-HHHHT.T-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 ff++l +s+v ++ + l++p +f+++h + ++ ++tl + ++W vk+ + ++ +++ + +Fv +n+L+egD++ F+l++ ++ +++v+v 462913689 449 FFTILQKSHVRRNqNFLIFPCHFVADHlD-SN-L-HEITLCRpNRKEKWCVKYYHARTAQGIR-NYNFFRFVCENKLREGDICAFELMKGvRRVTMTVHV 544 8999999999999667799********53.32.3.378888836669******7777777754.558999*****************9888********9 PP E-S CS B3 97 frk 99 +r+ 462913689 545 IRN 547 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.774 | 5 | 98 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-18 | 6 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 7 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.62E-17 | 7 | 89 | No hit | No description |
SMART | SM01019 | 3.4E-12 | 8 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-15 | 8 | 91 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-28 | 225 | 329 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-26 | 226 | 329 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.99E-22 | 231 | 324 | No hit | No description |
SMART | SM01019 | 1.8E-18 | 233 | 327 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-20 | 233 | 326 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 16.807 | 234 | 327 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-16 | 441 | 546 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.16E-15 | 444 | 549 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.69E-13 | 447 | 546 | No hit | No description |
SMART | SM01019 | 1.4E-4 | 449 | 548 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-10 | 449 | 547 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.122 | 450 | 548 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MAVTKIRFFK LMTGDFAKGI SIPEKFVENF NEKITEEFNL KVPGGEAWHV SVKKDADELF 60 LKSGWENFVK AHELQENDLL IFTCSGNSSF EASGCEKASS LFANKTGPNM CKYSDDEVNQ 120 GQLDGHYSLS GSEDATTPSQ LVGSPQGGST SQKHTLVTSS LNDIVPCKKP RMLLQSPNSS 180 DDHVKHEAIG EGDSDEQNSN SNYYYSMIAN RLSDEEKEEI ISLASIQSDN PAFFTVLQMS 240 HVRRNNNFLS IPEKFVNNFN GKITKEVNLK APSGETWQVG VNKDADELFL KSGWEDFVKA 300 HELQENDLLV FTFSGNSSFE VLIFEANGCE KVSSLSANKT GANMLKHSAN KANWGKHDEQ 360 YSLSDSKNTS KPSQLVGSPQ VATTSQNSSG KKSRMLPESP KRGEVGEEDS DEEYSNHKYY 420 YSRIADRLSD EEKEEVITLA SIRSDNPAFF TILQKSHVRR NQNFLIFPCH FVADHLDSNL 480 HEITLCRPNR KEKWCVKYYH ARTAQGIRNY NFFRFVCENK LREGDICAFE LMKGVRRVTM 540 TVHVIRNVDD RTDDVKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462913689 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004963038.1 | 1e-142 | B3 domain-containing protein Os12g0592300 | ||||
Swissprot | Q2QMT2 | 1e-96 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
Swissprot | Q2QMT5 | 7e-97 | Y1209_ORYSJ; B3 domain-containing protein LOC_Os12g40090 | ||||
TrEMBL | A0A368QMU4 | 1e-141 | A0A368QMU4_SETIT; Uncharacterized protein | ||||
TrEMBL | K3Z7I5 | 1e-141 | K3Z7I5_SETIT; Uncharacterized protein | ||||
STRING | Si022505m | 1e-141 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 8e-29 | B3 family protein |