PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462913356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 224aa MW: 24219.3 Da PI: 7.8471 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.3 | 4e-29 | 18 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lp GfrF+Ptdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdL + +a ++e +fF+ +k a+ +g+W+a+gk+k v+s ++ 462913356 18 LPIGFRFRPTDEELLLHYLRRKALACPLPA-DIIPVADLARLHPWDLVPAGDAADEERFFFHLPTTK---------AAGTGVWRASGKEKLVVSPrCKRP 107 699***************************.99**************64556678999***998665.........5689*************9877889 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg k+tLvf ++ g+++dW+mheyrl 462913356 108 VGAKRTLVFC---HRGGRRSDWLMHEYRL 133 *********9...677889********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-40 | 14 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.293 | 18 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-20 | 19 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MEAARLRNAA GGGGLAGLPI GFRFRPTDEE LLLHYLRRKA LACPLPADII PVADLARLHP 60 WDLVPAGDAA DEERFFFHLP TTKAAGTGVW RASGKEKLVV SPRCKRPVGA KRTLVFCHRG 120 GRRSDWLMHE YRLLPAVLAA GNPFASLVNF HGAAPRADDW VVCRIFKRTK PSGRGGRGRE 180 DAEEEIPSSP SSASSCVTDN SGNVDQEEED EQSSNGSSCS DASS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-24 | 18 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-24 | 18 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-24 | 18 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-24 | 18 | 168 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-24 | 18 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-24 | 18 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-24 | 18 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-24 | 18 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-24 | 18 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-24 | 18 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-24 | 18 | 168 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-24 | 18 | 168 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-24 | 18 | 168 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-24 | 18 | 168 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462913356 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-57 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184279.1 | 2e-78 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A0A9GFU0 | 2e-82 | A0A0A9GFU0_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Eb03721.1.p | 8e-78 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 5e-34 | NAC domain containing protein 83 |