PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462912624
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 361aa    MW: 40333.6 Da    PI: 8.064
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462912624genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-063453525
               --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaH 25
                C f+++ G C+yG+ C++ H
  462912624 34 VCTFYQK-GACSYGSHCRYEH 53
               5******.**********988 PP
2zf-CCCH24.25.7e-08151172426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C+ fa+ GtC+yG  C+ +Hg
  462912624 151 PICS-FAAAGTCPYGKDCSQMHG 172
                5788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.328128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-6426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.922956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-43155IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.479147174IPR000571Zinc finger, CCCH-type
SMARTSM003560.093148173IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-5152172IPR000571Zinc finger, CCCH-type
SuperFamilySSF578507.95E-12204280No hitNo description
Gene3DG3DSA:3.30.40.101.6E-9207275IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136394.8E-8215274IPR001841Zinc finger, RING-type
SMARTSM001841.2E-6216273IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.238216274IPR001841Zinc finger, RING-type
PROSITE patternPS005180240249IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.13303331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878303332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSKRVPCKFF LHGACFKGDH CEFSHDCNDQ PDNVCTFYQK GACSYGSHCR YEHIEASRNH  60
PQPSTTAAAR AASSSSELVS SSGRPHCREC QTVACNQVQK ICKPATALSS RRPAWKVDCH  120
KHNSPNPEDR NTNPSDQTVQ NQTSQCPAHL PICSFAAAGT CPYGKDCSQM HGDLCTFCEK  180
QCLHPYRPNE SGAHIKLCKK NSRRLEALRK SGEIECGVCL DRVLSKPTAA ERRFGLLSDC  240
DHSFCISCIR NWRSTSPTSG MDVNTTLRAC PVCRKLSYYV IPSVTWYFSK EEKQEIIEGY  300
KAKLKSIACK YFDFGKGTCP FGSICFYKHA YRDGRLEEVE LHDDDDSTAI ANISEKVGFV  360
L
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462912624
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698690.20.0E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA071e-162C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0A8XWY00.0A0A0A8XWY0_ARUDO; Uncharacterized protein
STRINGPavir.Aa00659.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-121C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]