PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462910903
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family GATA
Protein Properties Length: 207aa    MW: 23315.5 Da    PI: 10.9485
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462910903genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.82.3e-16102134133
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                Cs+C  t+Tp+WR gp g+ tLCnaCG++++  
  462910903 102 CSHCSNTETPQWRAGPCGPGTLCNACGIRFKNG 134
                *******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.102.8E-1395134IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.60996132IPR000679Zinc finger, GATA-type
SMARTSM004012.6E-1396150IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-1498159No hitNo description
CDDcd002028.60E-15101157No hitNo description
PfamPF003203.4E-14102135IPR000679Zinc finger, GATA-type
PROSITE patternPS003440102127IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTWETESPAR VSPPRAWVVP RKKKRHQPIT RRNHFWLPKS HPYSFAPANA KPRDTNPLSL  60
KSLGDSVSGI GNGTDSIRRL QRPEAKVPAP PRQRNRQRQR ACSHCSNTET PQWRAGPCGP  120
GTLCNACGIR FKNGKLFEEY RPSTSPSFES GKHSNRHRKV VKLRERKALL ISRMPDDDDD  180
DKKPVQALPP PSTGGEFMDV CTYIATG
Cis-element ? help Back to Top
SourceLink
PlantRegMap462910903
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804973.17e-43uncharacterized protein LOC112883918
TrEMBLA0A2T8KTM52e-41A0A2T8KTM5_9POAL; Uncharacterized protein
STRINGPavir.J33064.1.p2e-39(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127772434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.16e-27GATA transcription factor 2