PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462909845
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 379aa    MW: 41655.6 Da    PI: 8.4922
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462909845genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv ++k +G g+W++ +r  g+ R++k+c++rw +yl
        462909845 14 KGAWTKEEDERLVAYIKAHGEGCWRSLPRAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding56.18.4e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++Ed l+v+++++lG++ W++Ia++++ gRt++++k++w+++l
        462909845  67 RGNFTPDEDGLIVKLHALLGNK-WSLIAARLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
3Myb_DNA-binding41.72.7e-13210247948
                      HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      d l+v++++ lG++ W++Ia++++ gRt++++k++w+++l
        462909845 210 DALIVKLHAVLGNK-WSLIAARLP-GRTDNEIKNYWNTHL 247
                      7799**********.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.902961IPR017930Myb domain
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
SuperFamilySSF466897.49E-2913108IPR009057Homeodomain-like
PfamPF002491.1E-141461IPR001005SANT/Myb domain
CDDcd001674.02E-111661No hitNo description
PROSITE profilePS5129428.05562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2765117IPR009057Homeodomain-like
SMARTSM007173.3E-1666114IPR001005SANT/Myb domain
PfamPF002493.7E-1667112IPR001005SANT/Myb domain
CDDcd001672.23E-1269112No hitNo description
PROSITE profilePS5129415.869197251IPR017930Myb domain
SMARTSM007173.8E-8204249IPR001005SANT/Myb domain
CDDcd001671.09E-9210247No hitNo description
SuperFamilySSF466892.45E-11210255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-19210248IPR009057Homeodomain-like
PfamPF002491.5E-11210247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010224Biological Processresponse to UV-B
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:1903086Biological Processnegative regulation of sinapate ester biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLVAYIK AHGEGCWRSL PRAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TPDEDGLIVK LHALLGNKWS LIAARLPGRT DNEIKNYWNT HLRRKLVNMG  120
IDPVTHRPIN DTKTAGGDGN VVAFQPPSPN MVKASAAPRC PDLNLDLCIS PPSPFLSVEE  180
EEDVKPSNSR AVDMVATPDG SASAAAPWGD ALIVKLHAVL GNKWSLIAAR LPGRTDNEIK  240
NYWNTHLRRK LVNMGIDPVT HRPIINVEAD KAAGADGDVV AFQPQPKMQR PRCPDLNLDL  300
CISPPSPFLS VEEEEDVKPV VKPQGAGRLF CFGCSPLGLN NNNNNNNKGI ASDCTNCSSN  360
NHFLGLRLGM LDFRGLETK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-271311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00479DAPTransfer from AT4G38620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462909845
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794071e-142HF679407.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB1 protein.
GenBankJQ2554771e-142JQ255477.1 Saccharum hybrid cultivar Co 86032 MYB42 (MYB42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695776.13e-98PREDICTED: myb-related protein Zm38-like
SwissprotP200256e-96MYB38_MAIZE; Myb-related protein Zm38
TrEMBLC5YH316e-96C5YH31_SORBI; Uncharacterized protein
TrEMBLJ3MV251e-95J3MV25_ORYBR; Uncharacterized protein
STRINGOB08G29560.12e-96(Oryza brachyantha)
STRINGSb07g024890.11e-96(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-90myb domain protein 4
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]