PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462909803

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

MYB_related

Protein Properties

Length: 277aa MW: 30813.6 Da PI: 7.9833

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462909803	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.7	1.5e-14	126	170	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++d+ + lG+g+W+ I++ + ++Rt+ q+ s+ qky 462909803 126 PWTEEEHRKFLDGLRHLGKGDWRGISKSFVTTRTATQVASHAQKY 170 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.278	119	175	IPR017930	Myb domain
SMART	SM00717	3.6E-9	123	173	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.22E-16	124	175	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-17	125	174	IPR006447	Myb domain, plants
Pfam	PF00249	4.9E-12	126	170	IPR001005	SANT/Myb domain
CDD	cd00167	1.32E-9	126	171	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-10	126	169	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MERRPDEEQE RRKAAPMIFR LFGKDVHVAG EEEMDYEEDD GEHPKEPLKK STSMPNLITS 60 TNKSSALEEV ARKYASDDLD LATPHQKRRR RKAQERKKDQ STQVLDSGIN PASNDWLMGE 120 IGAGIPWTEE EHRKFLDGLR HLGKGDWRGI SKSFVTTRTA TQVASHAQKY FLRQTNPGKK 180 KRRASLFDVG MVDYNNNDQV PSPQSIATKP APTEEIIHTD RGDVPKPKAH GETFLASMPS 240 GLETASSISS LELSMAVNSL DLSIAPPRGA AGAIKVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	86	91	KRRRRK
2	86	97	KRRRRKAQERKK
3	87	97	RRRRKAQERKK
4	178	182	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000269\|PubMed:12172034}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress weakly the sugar-repressed transcription of promoters containing SRS. Contributes to the sugar-repressed transcription of promoters containing 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q7XC51}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462909803

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by sucrose. Slightly repressed by gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ965495	4e-79	AJ965495.1 Hordeum vulgare mcb1 gene, exons 1-5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983632.1	1e-96	transcription factor MYBS2
Swissprot	B8BI93	7e-67	MYBS2_ORYSI; Transcription factor MYBS2
Swissprot	Q7XC51	7e-67	MYBS2_ORYSJ; Transcription factor MYBS2
TrEMBL	A0A0A9KKT0	1e-113	A0A0A9KKT0_ARUDO; Uncharacterized protein
STRING	Si036966m	5e-96	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10464	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	4e-31	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]