PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462909566 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 209aa MW: 23854.9 Da PI: 10.3503 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 114.2 | 7.4e-36 | 96 | 181 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r +m+ r+++++ k+plWe++s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea 462909566 96 RWPKTEVHALIQLRMDMDARYQDSSPKGPLWEDISAGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 181 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0029 | 93 | 155 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 2.00E-27 | 95 | 160 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-4 | 95 | 153 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 1.8E-24 | 95 | 182 | No hit | No description |
PROSITE profile | PS50090 | 7.201 | 95 | 153 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MQQVVERQEE MQRRFLETME KREAERTARE EAWRRQEVAR LNREQDHLAQ ERAAAAAPRS 60 TPPTSGASLE LVPAAASEQH VDSGLGGELG AASSSRWPKT EVHALIQLRM DMDARYQDSS 120 PKGPLWEDIS AGMRRLGYNR SSKRCKEKWE NINKYYKKVK ESNKKRPEDS KTCPYFHQLE 180 AIRAMSSPPP PPPRLRPSLT KSTRAAGSR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specific DNA sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462909566 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT055033 | 1e-114 | BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798832.1 | 2e-69 | trihelix transcription factor GTL1-like isoform X2 | ||||
Swissprot | Q39117 | 6e-65 | TGT2_ARATH; Trihelix transcription factor GT-2 | ||||
TrEMBL | A0A151S716 | 2e-71 | A0A151S716_CAJCA; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P03520_001 | 2e-69 | (Musa acuminata) | ||||
STRING | GSMUA_Achr2P11910_001 | 2e-69 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-38 | Trihelix family protein |