PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462905959
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family Trihelix
Protein Properties Length: 347aa    MW: 37347.4 Da    PI: 10.9649
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462905959genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix431.2e-1354140186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W++ e+ aL+ a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk++ +++        s +++fd+l+
  462905959  54 CWSDGETSALVSAWGSRYIELNRGNLRQKQWQEVADAVnsrrgasARRRPPRTDVQCKNRVDTLKKKYKAELARNAP------SGWSFFDELD 140
                7*****************************************999999999********************999996......479****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.5E-2652142No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MPARPRRSGQ GSLRDLIPAA GERGDGGEGT RGGGGGGGAK LPPPNPNLPY REDCWSDGET  60
SALVSAWGSR YIELNRGNLR QKQWQEVADA VNSRRGASAR RRPPRTDVQC KNRVDTLKKK  120
YKAELARNAP SGWSFFDELD RLVGPTLSAN AARRPSPSTA PQFALPAHPP AIRKXXLPLP  180
NSRRGLPLPA AALIQKEAAA AAAAMSDSEN SDDAGGNHNH NSRRSPSRSV SSLSGNSKKR  240
SRHETGSSGD KGFRELARAI EAFAEMYERV ENAKQKHALE MERQRIDFLK QLEVKRMENF  300
VDAHVKLVKA KRTKKTAGSG AAADGAAGVD LVATVAALPF VSSSAFH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462905959
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440242.11e-151trihelix transcription factor ASIL2
TrEMBLA0A0A9IAS81e-152A0A0A9IAS8_ARUDO; Uncharacterized protein
STRINGSb09g028350.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-30sequence-specific DNA binding transcription factors