PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462904429
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YA
Protein Properties Length: 291aa    MW: 31907.4 Da    PI: 9.9284
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462904429genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.5e-32143198258
  CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                ep++VNaKQy++Il+RR+ Rakle+++kl  k rkpylheSRh+hAl+R+RgsgGrF
  462904429 143 EPIFVNAKQYHAILRRREIRAKLEAQNKL-VKDRKPYLHESRHQHALKRARGSGGRF 198
                8****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.3E-37140201IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.46141201IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-27143198IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-23144166IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860146166IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-23175198IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MADHTVCPVS KSNSGFLSGY QMKQSGHKAH SRDSSSESGW SHQGASAMSE SSLNEHTTAQ  60
SDSNDHLGKQ DQNRMKSVLS LGKQEPAFLP QKLEYNSSFV PYAAEAYYGE VFTGYSPPAV  120
VHPPQNGISN SPVPLPVEPA AVEPIFVNAK QYHAILRRRE IRAKLEAQNK LVKDRKPYLH  180
ESRHQHALKR ARGSGGRFLN TKQLQEQNQQ HQESGGSSST QITDQKLCSQ NGSTHTPPPP  240
APPGVTSHSR ANQDRSCFPS VGFRPNMNFS AQGGRDTKLV ANGMQHVVSM R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21143217374NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways. {ECO:0000250, ECO:0000269|PubMed:17322342}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462904429
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0967381e-79FP096738.1 Phyllostachys edulis cDNA clone: bphylf045e19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800585.11e-117nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800586.11e-117nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800587.11e-117nuclear transcription factor Y subunit A-4-like isoform X1
RefseqXP_025800588.11e-117nuclear transcription factor Y subunit A-4-like isoform X1
SwissprotQ9SYH43e-38NFYA5_ARATH; Nuclear transcription factor Y subunit A-5
TrEMBLA0A0A9DJ421e-124A0A0A9DJ42_ARUDO; Uncharacterized protein
STRINGPavir.Ba00442.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137338121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.11e-29nuclear factor Y, subunit A5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gao W,Liu W,Zhao M,Li WX
    NERF encodes a RING E3 ligase important for drought resistance and enhances the expression of its antisense gene NFYA5 in Arabidopsis.
    Nucleic Acids Res., 2015. 43(1): p. 607-17
    [PMID:25514924]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  4. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  5. Du Q,Zhao M,Gao W,Sun S,Li WX
    microRNA/microRNA* complementarity is important for the regulation pattern of NFYA5 by miR169 under dehydration shock in Arabidopsis.
    Plant J., 2017. 91(1): p. 22-33
    [PMID:28332758]
  6. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]