PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462902783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | FAR1 | ||||||||
Protein Properties | Length: 442aa MW: 50003.8 Da PI: 8.8651 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.1 | 1.1e-26 | 39 | 129 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg+ e++ + +++++++ra tr+gCka++++kk + gkw vtk+++ HnH 462902783 39 NFYSTYARSAGFQIRISRCTRSRRDNSIISRRIVCSKEGFCESRPCDgfhSDQKQHERAGTRVGCKAMIMIKKFSPGKWIVTKFVKIHNHG 129 6*******************************************9999999999************************************5 PP | |||||||
2 | FAR1 | 90 | 3.2e-28 | 177 | 269 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA++ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l+ 462902783 177 FYVNYARHKGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRTKKvmtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSLS 269 9********************************************99998899999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.5E-24 | 39 | 129 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 3.9E-26 | 177 | 269 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MDISLMHDDE KEKLIGLEDD TELTPYEGME FESEDAARNF YSTYARSAGF QIRISRCTRS 60 RRDNSIISRR IVCSKEGFCE SRPCDGFHSD QKQHERAGTR VGCKAMIMIK KFSPGKWIVT 120 KFVKIHNHGP VPPRKLDARL AHKDGDPMET PNSVEVDSAE EPFEGMEFES EEAAKLFYVN 180 YARHKGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRT KKVMTDEGKT KRPRMITRVG 240 CKAMIVVKKM NSGKWMVSKF EKEHNHSLSH SKAAPSISST TAGVVDHFAA RSTDPNEVKS 300 EGYNVETHCN STDSLTVLYN NLCQEAIKFA KEGSVTEEVY HVAVSALKEA AEKVAEVKRC 360 RPTLPYHGSI SERKHEVLQM KPISALQSSN DVGLKITAPG PEHMQKPSSN LVLIPTNLLT 420 NSRLSNCMDN VTQSREVLKN EY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462902783 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310343.1 | 0.0 | uncharacterized protein LOC8078835 | ||||
TrEMBL | A0A0A9FLW1 | 0.0 | A0A0A9FLW1_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G001663_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9031 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 8e-26 | FAR1 family protein |