PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462902751 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 442aa MW: 49825.7 Da PI: 8.9493 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.8 | 5e-25 | 39 | 129 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+ +GF++r+s+ ++s+r+++i++r+ vCskeg+ e++ + +++++++ra tr gCka +++kk + gkw v+k+++ HnH 462902751 39 NFYSTYARGAGFQIRISRCTRSRRDNSIISRRIVCSKEGFCESRPCDgfhSDQKQHERAGTRAGCKALIMIKKFSPGKWIVIKFVKIHNHG 129 6*******************************************9999999999************************************5 PP | |||||||
2 | FAR1 | 90.6 | 2.2e-28 | 177 | 269 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l+ 462902751 177 FYVNYARLHGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRTKKvmtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSLS 269 9********************************************99998899999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-22 | 39 | 129 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 2.5E-26 | 177 | 269 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 442 aa Download sequence Send to blast |
MEISLMHDDE KEKLIGLEDD TELTPYEGME FESEDAARNF YSTYARGAGF QIRISRCTRS 60 RRDNSIISRR IVCSKEGFCE SRPCDGFHSD QKQHERAGTR AGCKALIMIK KFSPGKWIVI 120 KFVKIHNHGP VPPKKIDARL AHKDGDPMEM PNSVEVDSAE EPFEGMEFES EEAAKLFYVN 180 YARLHGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRT KKVMTDEGKT KRPRMITRVG 240 CKAMIVVKKM NSGKWMVSKF EKEHNHSLSH SKAAPSISST TAGVVDHFAA RSTDPNEVKT 300 EGYNVGTHCN STDSLTVLYN NLCQEAIKFA KEGSVTEEVY HVAVSALKEA AEKVAKVKRG 360 RPTLPYHGSI SERKHEVLQM KPISVLQSSN DNGLKITAPG PEHVQEPSSN LVLIPTNLLT 420 NSRLSNCIDN VPQSREVLKN EY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462902751 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021310343.1 | 0.0 | uncharacterized protein LOC8078835 | ||||
TrEMBL | A0A0A9FLW1 | 0.0 | A0A0A9FLW1_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ia03883.1.p | 0.0 | (Panicum virgatum) | ||||
STRING | GRMZM2G001663_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9031 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06250.1 | 2e-24 | FAR1-related sequence 7 |