PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462902751

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

FAR1

Protein Properties

Length: 442aa MW: 49825.7 Da PI: 8.9493

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462902751	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.8	5e-25	39	129	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+ +GF++r+s+ ++s+r+++i++r+ vCskeg+ e++ + +++++++ra tr gCka +++kk + gkw v+k+++ HnH 462902751 39 NFYSTYARGAGFQIRISRCTRSRRDNSIISRRIVCSKEGFCESRPCDgfhSDQKQHERAGTRAGCKALIMIKKFSPGKWIVIKFVKIHNHG 129 6*****************************************9999999999**********************************5 PP
2	FAR1	90.6	2.2e-28	177	269	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l+ 462902751 177 FYVNYARLHGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRTKKvmtdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSLS 269 9******************************************99998899999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-22	39	129	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.5E-26	177	269	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MEISLMHDDE KEKLIGLEDD TELTPYEGME FESEDAARNF YSTYARGAGF QIRISRCTRS 60 RRDNSIISRR IVCSKEGFCE SRPCDGFHSD QKQHERAGTR AGCKALIMIK KFSPGKWIVI 120 KFVKIHNHGP VPPKKIDARL AHKDGDPMEM PNSVEVDSAE EPFEGMEFES EEAAKLFYVN 180 YARLHGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRT KKVMTDEGKT KRPRMITRVG 240 CKAMIVVKKM NSGKWMVSKF EKEHNHSLSH SKAAPSISST TAGVVDHFAA RSTDPNEVKT 300 EGYNVGTHCN STDSLTVLYN NLCQEAIKFA KEGSVTEEVY HVAVSALKEA AEKVAKVKRG 360 RPTLPYHGSI SERKHEVLQM KPISVLQSSN DNGLKITAPG PEHVQEPSSN LVLIPTNLLT 420 NSRLSNCIDN VPQSREVLKN EY

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MEISLMHDDE KEKLIGLEDD TELTPYEGME FESEDAARNF YSTYARGAGF QIRISRCTRS  60
RRDNSIISRR IVCSKEGFCE SRPCDGFHSD QKQHERAGTR AGCKALIMIK KFSPGKWIVI  120
KFVKIHNHGP VPPKKIDARL AHKDGDPMEM PNSVEVDSAE EPFEGMEFES EEAAKLFYVN  180
YARLHGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRT KKVMTDEGKT KRPRMITRVG  240
CKAMIVVKKM NSGKWMVSKF EKEHNHSLSH SKAAPSISST TAGVVDHFAA RSTDPNEVKT  300
EGYNVGTHCN STDSLTVLYN NLCQEAIKFA KEGSVTEEVY HVAVSALKEA AEKVAKVKRG  360
RPTLPYHGSI SERKHEVLQM KPISVLQSSN DNGLKITAPG PEHVQEPSSN LVLIPTNLLT  420
NSRLSNCIDN VPQSREVLKN EY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462902751

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021310343.1	0.0	uncharacterized protein LOC8078835
TrEMBL	A0A0A9FLW1	0.0	A0A0A9FLW1_ARUDO; Uncharacterized protein
STRING	Pavir.Ia03883.1.p	0.0	(Panicum virgatum)
STRING	GRMZM2G001663_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-24	FAR1-related sequence 7