PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462900817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 426aa MW: 47118.5 Da PI: 6.7909 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.3e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + ++++G g+W+t+++ g+ R++k+c++rw +yl 462900817 14 KGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2e-14 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E++l++++++ lG++ W+ Ia +++ gRt++++k+ w+ 462900817 67 RGAFSQDEEDLIIELHAVLGNR-WSQIATRLP-GRTDNEIKNLWN 109 89********************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-27 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.586 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.37E-11 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.868 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-13 | 67 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.09E-9 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLMNHIT KHGHGCWSTV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQDEEDLIIE LHAVLGNRWS QIATRLPGRT DNEIKNLWNS SIKKKLRQKG 120 IDPNTHKPLA EVDRSKAAPT ISTERTSESS DVDPSSGGAL GNLNHLLSET AQSPELLPVL 180 GKHRKETTSL AHLRVPPKEL FLDQLVPGHD NLPSGRLTGP IPNFPFQQLS CYSNGFGSSH 240 GGSTNSLWYN QNEASGSTIS TVMPPVSPST LSTSTGLNRS PDNQHSGGTT IQSTQFYWDT 300 TDPSSSSSRG SSGSNGLGFE LQGTSSLLEN SVFPWTDLAD KNSQAHLEEE LKWPDLLHGT 360 FTDTPATMQN LSQSLYEDVV KAESQFNMEG LCAVWSQNLQ PPQHLQAVSD LYDKDLQRMS 420 LSFENI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462900817 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457686.1 | 0.0 | transcription factor MYB61 isoform X1 | ||||
TrEMBL | A0A3L6SJH8 | 0.0 | A0A3L6SJH8_PANMI; Transcription factor MYB86 | ||||
STRING | Sb03g011640.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2310 | 37 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 2e-90 | myb domain protein 61 |