PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462896978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C2H2 | ||||||||
Protein Properties | Length: 161aa MW: 17928.5 Da PI: 6.869 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 22.7 | 2.6e-07 | 118 | 140 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cg++F+ + +Lk+H+++H 462896978 118 HDCEKCGMRFKKPAHLKQHMQSH 140 56*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.46E-7 | 72 | 140 | No hit | No description |
SMART | SM00355 | 15 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 118 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0047 | 118 | 140 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.136 | 118 | 143 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 120 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
FSLAPRLRLS RRLPRDPADS AVPPRFEVLV LGVGEMGGGE PVPREGGEPG TDDGMSTAAE 60 AAGTPAPVRD IRRYKCEFCS VVRSKKSLIR AHVLEHHEDE VDGLEDYLGG VPRKEVFHDC 120 EKCGMRFKKP AHLKQHMQSH SLEIWMCEAL DPKELQNARG F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462896978 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566649.1 | 6e-37 | transcription factor IIIA isoform X1 | ||||
TrEMBL | C0J7J8 | 8e-40 | C0J7J8_MAIZE; Truncated transcription factor IIIA EI isoform (Fragment) | ||||
STRING | BRADI2G37790.1 | 2e-36 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17974 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 7e-18 | transcription factor IIIA |