PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896955
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 177aa    MW: 20350.4 Da    PI: 7.1613
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896955genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1609.1e-50221521129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 
                lp GfrFhP++ee++++yL +kv + ++ + ++i+evdi+k+ePw+Lp+++k +e+ewyf++ + +ky+tg+r+nr++  gyWkatgkd++++++++++ 
  462896955  22 LPLGFRFHPSNEEIITFYLMRKVLDVSFIA-HAIEEVDINKFEPWELPEMAKMGENEWYFYCLKGRKYSTGSRANRTIMVGYWKATGKDRQIYQATSTVp 120
                699************************877.78***************9889999***************************************866557 PP

        NAM 100 ..vglkktLvfykgrapkgektdWvmheyrle 129
                  vg+kk+Lvfykgrap+g ktdWvmhe+rle
  462896955 121 ilVGMKKMLVFYKGRAPTGIKTDWVMHEFRLE 152
                77***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5314155IPR003441NAC domain
PROSITE profilePS5100549.14222177IPR003441NAC domain
PfamPF023655.8E-2323151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGDHQHQWAI ISGDTISNDL ELPLGFRFHP SNEEIITFYL MRKVLDVSFI AHAIEEVDIN  60
KFEPWELPEM AKMGENEWYF YCLKGRKYST GSRANRTIMV GYWKATGKDR QIYQATSTVP  120
ILVGMKKMLV FYKGRAPTGI KTDWVMHEFR LEGSMLPFHT ANSNSSVTAM ESSSQVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-451915112140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896955
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801540.15e-66NAC domain-containing protein 79-like
SwissprotQ9FLJ29e-63NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1E5V4C41e-65A0A1E5V4C4_9POAL; NAC domain-containing protein 79
TrEMBLA0A3L6QRB79e-67A0A3L6QRB7_PANMI; Protein CUP-SHAPED COTYLEDON 1-like
STRINGPavir.Ba02955.1.p5e-66(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.14e-65NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]