PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462896955 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 177aa MW: 20350.4 Da PI: 7.1613 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160 | 9.1e-50 | 22 | 152 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel. 99 lp GfrFhP++ee++++yL +kv + ++ + ++i+evdi+k+ePw+Lp+++k +e+ewyf++ + +ky+tg+r+nr++ gyWkatgkd++++++++++ 462896955 22 LPLGFRFHPSNEEIITFYLMRKVLDVSFIA-HAIEEVDINKFEPWELPEMAKMGENEWYFYCLKGRKYSTGSRANRTIMVGYWKATGKDRQIYQATSTVp 120 699************************877.78***************9889999***************************************866557 PP NAM 100 ..vglkktLvfykgrapkgektdWvmheyrle 129 vg+kk+Lvfykgrap+g ktdWvmhe+rle 462896955 121 ilVGMKKMLVFYKGRAPTGIKTDWVMHEFRLE 152 77***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-53 | 14 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.142 | 22 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-23 | 23 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MGDHQHQWAI ISGDTISNDL ELPLGFRFHP SNEEIITFYL MRKVLDVSFI AHAIEEVDIN 60 KFEPWELPEM AKMGENEWYF YCLKGRKYST GSRANRTIMV GYWKATGKDR QIYQATSTVP 120 ILVGMKKMLV FYKGRAPTGI KTDWVMHEFR LEGSMLPFHT ANSNSSVTAM ESSSQVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-45 | 19 | 151 | 12 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462896955 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801540.1 | 5e-66 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9FLJ2 | 9e-63 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1E5V4C4 | 1e-65 | A0A1E5V4C4_9POAL; NAC domain-containing protein 79 | ||||
TrEMBL | A0A3L6QRB7 | 9e-67 | A0A3L6QRB7_PANMI; Protein CUP-SHAPED COTYLEDON 1-like | ||||
STRING | Pavir.Ba02955.1.p | 5e-66 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 4e-65 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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