PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896806
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 368aa    MW: 41048.9 Da    PI: 6.7889
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896806genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.73.4e-5141311128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lp+GfrFhPtdeel+v+yL +++++ ++++  +i+ev+iy+++PwdLp k+  +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls+ ++e+
  462896806   4 LPAGFRFHPTDEELIVHYLMNQAASIPCPV-PIIAEVNIYQCNPWDLPPKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKAILSTpTSEN 102
                799***************************.88**************96666789**************************************9989999 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +g+kk Lvfy+g+ pkg+ktdW+mheyrl
  462896806 103 IGVKKALVFYRGKPPKGVKTDWIMHEYRL 131
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-632159IPR003441NAC domain
PROSITE profilePS5100558.9374159IPR003441NAC domain
PfamPF023656.1E-265131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MPSLPAGFRF HPTDEELIVH YLMNQAASIP CPVPIIAEVN IYQCNPWDLP PKALFGENEW  60
YFFSPRDRKY PNGARPNRAA GSGYWKATGT DKAILSTPTS ENIGVKKALV FYRGKPPKGV  120
KTDWIMHEYR LTVGNKTTKR KGSSPMRLDD WVLCRIYKKT NNFQLSDQEQ EGSTVEEDSS  180
LNNMNGVASP KSEAAHASDD DQFRPLSMTK SCSLTNFFNN IDYSTLSELL LDVPTGPEPQ  240
QSPLIYTTPA SHSLNDVNNS INMPQVDALC SDYGASYNGL KRKRIMTGDG ANSFDDGSSF  300
MKKLHLPSDT RSGNFSSTSS YFDQQVAEAG RNIQYGSPEA GRNIQYSSLP SHPFLNQQLL  360
LHNHLEMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-73316414173Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896806
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828039.11e-165NAC transcription factor 29-like
TrEMBLA0A2S3IC671e-164A0A2S3IC67_9POAL; Uncharacterized protein
STRINGSi010410m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-85NAC-like, activated by AP3/PI