PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462896440 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | C3H | ||||||||
Protein Properties | Length: 207aa MW: 23434.1 Da PI: 7.4769 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39 | 1.3e-12 | 65 | 90 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ 462896440 65 YQPDICKDYKETGYCGYGDSCKFMHD 90 67789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.5E-10 | 62 | 95 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 64 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 64 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.4E-10 | 65 | 90 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-13 | 65 | 95 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 6.2E-14 | 135 | 184 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 1.66E-13 | 142 | 185 | No hit | No description |
Pfam | PF13920 | 9.7E-9 | 142 | 183 | No hit | No description |
SMART | SM00184 | 1.6E-4 | 143 | 180 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 10.527 | 143 | 181 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 6.86E-7 | 143 | 184 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 158 | 167 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
AEESLKKNPS GSGSGKGEVY KGIHGYTDHK AGFRREHTVS SEKAGGSHGP LRASAHIRLT 60 ARFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQL EKEWEEAEKA RKRRIAMRGA 120 DGSDDEAAED DSDEDEEALP FACFICRQPF VDPVVTKCKH YFCEHCALKH HSKNKKCFVC 180 NKPTLGIFNA AQEIRKKMAE DKKQQQD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 4e-56 | 19 | 198 | 152 | 317 | RING finger protein 113A |
5z58_M | 4e-56 | 19 | 198 | 152 | 317 | RING finger protein 113A |
6ff4_t | 4e-56 | 19 | 198 | 152 | 317 | RING finger protein 113A |
6ff7_t | 4e-56 | 19 | 198 | 152 | 317 | RING finger protein 113A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462896440 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156391.1 | 1e-136 | zinc finger CCCH domain-containing protein 15 | ||||
Swissprot | Q6K4V3 | 1e-117 | C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | A0A3B6JMH3 | 1e-134 | A0A3B6JMH3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453IHI9 | 1e-134 | A0A453IHI9_AEGTS; Uncharacterized protein | ||||
TrEMBL | R7W9H9 | 1e-133 | R7W9H9_AEGTA; Zinc finger CCCH domain-containing protein 15 | ||||
STRING | EMT14529 | 1e-134 | (Aegilops tauschii) | ||||
STRING | Traes_4DL_4C78C56A4.1 | 1e-134 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8071 | 36 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 2e-97 | C3H family protein |
Publications ? help Back to Top | |||
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