PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462896377
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 194aa    MW: 20941.2 Da    PI: 4.8812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462896377genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-183080156
        AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56
               + y+GVr++   g+Wv+eIr+       +  r++lg++ t+e+Aa+a++aa+++l+g+
  462896377 30 PVYRGVRFR--AGKWVSEIRElR-----KpSRIWLGTYPTPEMAAAAYDAAALALRGA 80
               68*****96..5*********66.....68*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-123079IPR001471AP2/ERF domain
PROSITE profilePS5103218.7553187IPR001471AP2/ERF domain
SMARTSM003808.1E-243193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-253189IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-183189IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEQQRRRQEE RIRAAASALG RRARAETRHP VYRGVRFRAG KWVSEIRELR KPSRIWLGTY  60
PTPEMAAAAY DAAALALRGA GTALNFPDEA RSRPAPASAS AEDVRAAASS DRHDELKGRG  120
NNGGADERRD DDGAGAMAED GVVDEDDVFE MPRLMVSMAE GLMMSPPVLG PPAAADGAAS  180
LEDEDGVSLL WDHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1229891274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462896377
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0788945e-87AC078894.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence.
GenBankAP0149665e-87AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankAY2582805e-87AY258280.1 Oryza sativa (japonica cultivar-group) CR103 transcription factor gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158202.15e-63ethylene-responsive transcription factor ERF026-like
SwissprotQ9SJR01e-37ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0E0M9Y26e-67A0A0E0M9Y2_ORYPU; Uncharacterized protein
STRINGOPUNC10G14720.11e-67(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-15ERF family protein