PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462894627 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 91aa MW: 10440 Da PI: 5.9057 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50 | 3.9e-16 | 1 | 31 | 21 | 51 |
HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51 +KKA+ELSvLCdaev +i+fs++g+ly ++s 462894627 1 MKKASELSVLCDAEVGLIVFSPRGRLYQFAS 31 8****************************86 PP | |||||||
2 | K-box | 15.2 | 8.8e-07 | 63 | 89 | 71 | 97 |
K-box 71 ellleqieelqkkekelqeenkaLrkk 97 + l++qi+el++ke++l +en+ Lr + 462894627 63 KKLMDQISELREKERNLMKENEVLRDQ 89 6799*******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.1E-4 | 1 | 32 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-17 | 1 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.657 | 1 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-13 | 1 | 29 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 91 aa Download sequence Send to blast |
MKKASELSVL CDAEVGLIVF SPRGRLYQFA SATELQETID RYLNHTKGTP ANLKVDVPGI 60 EQKKLMDQIS ELREKERNLM KENEVLRDQA Y |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 76 | LREKER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462894627 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098509 | 1e-51 | FP098509.1 Phyllostachys edulis cDNA clone: bphylf003i12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680391.1 | 1e-30 | MADS-box protein SOC1 isoform X3 | ||||
Swissprot | P0C5B2 | 4e-19 | MAD56_ORYSJ; MADS-box transcription factor 56 | ||||
TrEMBL | I1HW38 | 2e-34 | I1HW38_BRADI; MADS-box transcription factor 22 | ||||
STRING | BRADI3G00730.1 | 3e-35 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 8e-21 | AGAMOUS-like 20 |
Publications ? help Back to Top | |||
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