PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462894481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB_related | ||||||||
Protein Properties | Length: 238aa MW: 26374.3 Da PI: 10.3993 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31 | 5.8e-10 | 136 | 159 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W++Ia++++ gRt++++k++w+++ 462894481 136 RWSKIAARLP-GRTDNEIKNHWNTH 159 6*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-8 | 5 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.36E-5 | 8 | 38 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.818 | 9 | 160 | IPR017877 | Myb-like domain |
SMART | SM00717 | 9.1E-11 | 13 | 162 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.6E-9 | 135 | 169 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-12 | 135 | 164 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-7 | 136 | 159 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.27E-7 | 137 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRQPCCDKV GVKKGPWTAE EDQKLVGFLL THGHCCWRIG PKARRAAAVR EELPAAVDQL 60 PAPRPEAGPP LRRGGAARHR PARAARQQVR APRRAASRVP FRSPCSHALS VSQFLIAVDR 120 SSVFFLRRRA CVRACRWSKI AARLPGRTDN EIKNHWNTHI RKKLLRMGID PVTHLPVHQA 180 PAPPPATEWP EPMYLFGMDG IMDAGWDGLF SGADGGMSLD PFEPYPDAGG FDQGDDWI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462894481 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107483 | 1e-108 | AK107483.1 Oryza sativa Japonica Group cDNA clone:002-129-C06, full insert sequence. | |||
GenBank | FJ940217 | 1e-108 | FJ940217.1 Oryza sativa Japonica Group clone KCS132B07 Myb related transcription factor mRNA, complete cds. | |||
GenBank | JX235928 | 1e-108 | JX235928.1 Oryza sativa Japonica Group Myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965175.1 | 6e-49 | protein ODORANT1 | ||||
TrEMBL | K3XYK9 | 1e-47 | K3XYK9_SETIT; Uncharacterized protein | ||||
STRING | Si007017m | 2e-48 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G22680.1 | 8e-21 | myb domain protein 85 |