PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462894315
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 449aa    MW: 50501.6 Da    PI: 5.6256
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462894315genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind107.97.8e-34881802103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw  +g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv++++         we++++ F k++k+ll++ik
     462894315  88 FLTKVYDMVSDPATDSVISWGPTGGSFVIWDSHAFERDLLPRHFKHNHFTSFIRQLNTYGFRKVDQDR---------WEWANEGFVKDQKHLLKTIK 175
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rkk++
     462894315 176 RKKKT 180
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5484177IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.99E-3384177IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.0E-3685177IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-1888111IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.5E-3188177IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-18126138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-18139151IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSYLMIGRHK HSGSAKSQTN EPNQNPLAAD SISKHQENPR AFASSPWARR SGRRSPPRSS  60
RALPAPAGKG PASAPVGVVP KPPDVAPFLT KVYDMVSDPA TDSVISWGPT GGSFVIWDSH  120
AFERDLLPRH FKHNHFTSFI RQLNTYGFRK VDQDRWEWAN EGFVKDQKHL LKTIKRKKKT  180
SQETPDPPQA PVKTPPGTEN IEIGNYGGLE KEVETLKRDK TLLMQQLVDL RQYQQSSSLE  240
LQNLIQRLHV MEKNQQQMMA LLAIVVSNPD FLNQLVQQQR RSSWCYDDGS KKRRYHALEQ  300
GPVADQKTSG AGAQIIQYLP PVTEISNQVM PVNGCSNLSQ TVSSPALAMP MDTEPTSDNA  360
DTLGSTRNIF TDSSAQHEVD DMLLFVDDLE SMLQLDDQDC QLEEQQDNQM EAQQNCEMEP  420
PLTIEDYPNF ELDCQMGAQQ NCQNPQYVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25691779129Heat shock factor protein 1
5d5v_B2e-25691779129Heat shock factor protein 1
5d5v_D2e-25691779129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462894315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468244.10.0heat stress transcription factor A-9
RefseqXP_021306702.10.0heat stress transcription factor A-9
SwissprotQ10PR41e-169HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLB4F9K60.0B4F9K6_MAIZE; Uncharacterized protein
STRINGSb01g042370.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.11e-65heat shock factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]