PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891995
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 233aa    MW: 26125.1 Da    PI: 5.4561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891995genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-1956105255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr++  +g+WvAeIr+p   + r kr +lg+f ta eAa a+++a+++++g
  462891995  56 AYRGVRQRT-WGKWVAEIREP---N-RgKRLWLGSFPTAVEAAHAYDEAARAMYG 105
                59****999.**********8...3.35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1355105IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2156114IPR016177DNA-binding domain
PROSITE profilePS5103221.79956113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3156115IPR001471AP2/ERF domain
SMARTSM003801.7E-3556119IPR001471AP2/ERF domain
PRINTSPR003672.5E-95768IPR001471AP2/ERF domain
CDDcd000182.40E-2957115No hitNo description
PRINTSPR003672.5E-97995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRRKSTGPDS IAETIKRWKE HNQKLQEANG ARKAPAKGSK KGCMAGKGGP ENVNCAYRGV  60
RQRTWGKWVA EIREPNRGKR LWLGSFPTAV EAAHAYDEAA RAMYGPTARV NFSESSADAN  120
SGCTSALSLL ASNVPPAAQR SDDKDEVESV ETEVHDVKIE VNDDLRSIHV ERKTLEVFRS  180
EETVLRKEGD ISYDYFHVED VLEMIIIEMN ADKKIEVHEE YQDGDDGFSL FSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1457112662ATERF1
3gcc_A3e-1457112662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891995
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5124600.0EF512460.1 Buchloe dactyloides dehydration responsive element binding protein (DREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296982.11e-140dehydration-responsive element-binding protein 2A
RefseqXP_004968294.11e-140dehydration-responsive element-binding protein 2A isoform X1
SwissprotA2WL191e-123DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
TrEMBLQ6JHV11e-159Q6JHV1_CYNDA; DREB-like protein 1
STRINGSi002067m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73153551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-35ERF family protein