PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891720
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 304aa    MW: 34132.5 Da    PI: 7.8768
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891720genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.2e-12162187126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                y   +C+++ +tG+C yGd+CkF+H+
  462891720 162 YQPDICKDYKETGYCGYGDSCKFMHD 187
                67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9159192IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7161188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878161189IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10162187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12162192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.108.6E-14236281IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139209.6E-9239280No hitNo description
SuperFamilySSF578501.52E-13239282No hitNo description
PROSITE profilePS5008910.689240278IPR001841Zinc finger, RING-type
CDDcd001623.12E-8240281No hitNo description
SMARTSM001847.5E-5240277IPR001841Zinc finger, RING-type
PROSITE patternPS005180255264IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MADSGSGGAS APVCNFVRKP PKNIRKRPAA PAGSADEXXX XXXXXXXXXX XEPRKFQYES  60
SRTIQASTDS RATATLETET EFDRDARAIR ERQLKQAEES LKKNPSAAAA SGSGEVYKGI  120
HGYTDYKAGF RREHTVSSEK AGGSHGPLRA SAHIRLTARF DYQPDICKDY KETGYCGYGD  180
SCKFMHDRGD YKSGWQLEKE WEEAEKARKR RIAMRGGDGS DDEAAEDDSD DDEEALPFAC  240
FICREPFVDP VVTKCKHYFC EHCALKHHSK NKKCFVCNKP TLGIFNAAQE IRKKMAEDKK  300
KQQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-6358295100317RING finger protein 113A
5z58_M2e-6358295100317RING finger protein 113A
6ff4_t2e-6358295100317RING finger protein 113A
6ff7_t2e-6358295100317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315670.0CT831567.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA018I20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156391.11e-175zinc finger CCCH domain-containing protein 15
SwissprotQ6K4V31e-162C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3B6JMH31e-174A0A3B6JMH3_WHEAT; Uncharacterized protein
TrEMBLA0A453IHI91e-174A0A453IHI9_AEGTS; Uncharacterized protein
TrEMBLR7W9H91e-173R7W9H9_AEGTA; Zinc finger CCCH domain-containing protein 15
STRINGEMT145291e-174(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80713645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-121C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]