PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891669
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NF-YA
Protein Properties Length: 318aa    MW: 34856.2 Da    PI: 9.3853
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891669genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.2e-3288144158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                dep+YVN+KQy++Il+RRq Rakle+++kl  k+rkpylheSRh hA++R+RgsgGrF
  462891669  88 DEPIYVNPKQYRGILRRRQLRAKLEAQNKL-VKARKPYLHESRHLHAMKRARGSGGRF 144
                79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-3786147IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.11687147IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.3E-2889144IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-2290112IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.3E-22121144IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSPWSNLLLD ACISYPYNEF GSGGVWAAYG SRTSTVASIY HTAYLSIYLS SFLYVLSDHQ  60
LYQKQSHPQI TGGGAAGRIP LPLELAEDEP IYVNPKQYRG ILRRRQLRAK LEAQNKLVKA  120
RKPYLHESRH LHAMKRARGS GGRFLNTKQL QQQQSARSNK DSANSLGSTH LRLGDGTSAP  180
KTMASQENSK KARSNKDSAN SLGSTHLRLG DGTSAPKTMA SQDSSKRAGS SAPELFQFPG  240
QHLSLSDYFG QAGVCTATAA TVDEFPPEYA CAKILYPGEC DRKACHDNCF DHYRGDGLCV  300
RAGCQCRYKC KPPPGDDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-2088149263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891669
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824571.16e-76nuclear transcription factor Y subunit A-8-like isoform X1
RefseqXP_025824579.13e-76nuclear transcription factor Y subunit A-6-like isoform X2
TrEMBLA0A2T7FCV52e-76A0A2T7FCV5_9POAL; Uncharacterized protein
STRINGPavir.Aa00318.1.p5e-78(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.17e-38nuclear factor Y, subunit A5