PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462891596 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 572aa MW: 63857.5 Da PI: 5.4519 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1.1e-17 | 126 | 175 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg++ ++eeAa+a++ +++++g 462891596 126 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDVEARRIRG 175 69*******.**********954...4************************998 PP | |||||||
2 | AP2 | 55.9 | 1.1e-17 | 307 | 356 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg++ ++eeAa+a++ +++++g 462891596 307 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDVEARRIRG 356 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.75E-21 | 126 | 185 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.18E-28 | 126 | 184 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 126 | 184 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 126 | 183 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-35 | 126 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 127 | 138 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-11 | 127 | 175 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-9 | 149 | 165 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-21 | 307 | 366 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.18E-28 | 307 | 365 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-30 | 307 | 365 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.762 | 307 | 364 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.1E-35 | 307 | 370 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.5E-11 | 308 | 356 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MCGGAILKAG EGRKRRPRRA DDEELLKEES DEDFEADFEE FEVESGESEL ESDDDVKPVA 60 ATRSGVARGT TLYSKAMPQH IYHHTSSLSW SGEFLLISFL ADGLNTTPAG ADGAAARSAK 120 RKRKNQFRGI RRRPWGKWAA EIRDPRKGVR VWLGTYNSPE EAARAYDVEA RRIRGKKAKV 180 NFPDEVPVAS EKCRALPTSM KVPNLDTEEK PIIKPIKKKQ RKAGEGRKRR PRRADDEELL 240 KEESDEDFEA DFEEFEVESG ESELESDDDV KPVAATRSGV ARDGLNSTPA GADGAAARSA 300 KRKRKNQFRG IRRRPWGKWA AEIRDPRKGV RVWLGTYNSP EEAARAYDVE ARRIRGKKAK 360 VNFPDEVPVA SEKCRALPTS MKVPNLDTEE KPIIKPIVNN MTNSNAFSYP HELVVQPQNM 420 SFVPMANPAA PIQEHFMNLS SDQGSNSFSC SDFSRENDTR TPDITSVLAP IPILTQLDES 480 AFLQNTSNAV TPPVMENASV DVPDLEPYMN FLMDSGSDES MNTLLSCDGS QDVLSNMDLW 540 TFEDMPFSAV VSSVKAAISK PIWFAPRQNR DL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-19 | 125 | 371 | 13 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 300 | 314 | KRKRKNQFRGIRRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462891596 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015643752.1 | 1e-142 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-115 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A1E5UKA8 | 1e-146 | A0A1E5UKA8_9POAL; Ethylene-responsive transcription factor 1 | ||||
STRING | Pavir.Ia01229.1.p | 1e-142 | (Panicum virgatum) | ||||
STRING | OGLUM06G06300.1 | 1e-142 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 8e-29 | ERF family protein |