PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462891473
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ERF
Protein Properties Length: 213aa    MW: 23089.4 Da    PI: 6.7843
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462891473genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17102151356
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                y+GVr+++ +grW++eIrdp+      r +lg+f+ta +Aa+a++  +++++g+
  462891473 102 YRGVRQRP-WGRWASEIRDPVL---GVRLWLGTFDTAADAARAYDDEARRIHGA 151
                9*******.**********744...3*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.089101158IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20101158IPR016177DNA-binding domain
SMARTSM003801.8E-34101164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-30101158IPR001471AP2/ERF domain
PRINTSPR003676.8E-11102113IPR001471AP2/ERF domain
PfamPF008472.4E-9102149IPR001471AP2/ERF domain
CDDcd000184.65E-18102158No hitNo description
PRINTSPR003676.8E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MPSGHAFFLG PVARRHRFSS SGKKKRPGAL LSADDDSEQW EAAFREFVDS ESDGDGDAIA  60
PPAFLISDDT MAPVAGVSGS KPSGITTPAP ARRRVRRRSG TYRGVRQRPW GRWASEIRDP  120
VLGVRLWLGT FDTAADAARA YDDEARRIHG ARARTNFPPG EAEASGGSSD ASAPLELECC  180
SDDVLDNLLA GFNDASPRST DSWRFCSFQR QST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18102158663ATERF1
3gcc_A1e-18102158663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462891473
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4539648e-49DQ453964.1 Oryza sativa (indica cultivar-group) clone BAC 101O9 chromosome 9 map Sub1 locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696560.11e-32PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A0D9XC342e-38A0A0D9XC34_9ORYZ; Uncharacterized protein
STRINGLPERR09G02840.13e-39(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP152001318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.13e-13ERF family protein