PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462891464 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | ERF | ||||||||
Protein Properties | Length: 125aa MW: 13647 Da PI: 5.1953 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.7e-18 | 16 | 66 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r+++ +grW++eIrdp+ + r +lg+f+ta +Aa+a++a +++++g 462891464 16 CPYHGIRQRP-WGRWASEIRDPV----KgVRLWLGTFDTAVDAARAYDAEARRIYG 66 679*******.**********75....44***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.1E-34 | 17 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-9 | 17 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.535 | 17 | 74 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.90E-28 | 18 | 74 | No hit | No description |
PRINTS | PR00367 | 4.0E-10 | 18 | 29 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 18 | 74 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 18 | 75 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.0E-10 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MDPNTFRREA RRRGNCPYHG IRQRPWGRWA SEIRDPVKGV RLWLGTFDTA VDAARAYDAE 60 ARRIYGARAK TNFPPGASTE ADQASGNSSD ASAPLELECC SDDVLDSLLA GFGDSLVGVI 120 SNTDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 18 | 74 | 6 | 63 | ATERF1 |
3gcc_A | 2e-19 | 18 | 74 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462891464 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR720463 | 1e-55 | FR720463.1 Oryza eichingeri partial sub1C-1 like gene 1, bio material IRGC 101429. | |||
GenBank | FR720467 | 1e-55 | FR720467.1 Oryza eichingeri partial sub1C-1 like gene 5, bio material IRGC 101429. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015610635.1 | 8e-33 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 3e-27 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
Swissprot | Q8H0T5 | 1e-27 | ERF73_ARATH; Ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A0D9XC34 | 2e-36 | A0A0D9XC34_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G02840.1 | 3e-37 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17972 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-21 | ERF family protein |