PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462890861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NF-YA | ||||||||
Protein Properties | Length: 299aa MW: 32316.8 Da PI: 9.9103 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104 | 1.3e-32 | 142 | 198 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rakle+++kl k+rkpylheSRh+hA++R+RgsgGrF 462890861 142 EEPIFVNAKQYHAILRRRQVRAKLEAQNKL-VKARKPYLHESRHRHAMKRARGSGGRF 198 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.6E-37 | 140 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.512 | 141 | 201 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.3E-28 | 143 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.3E-24 | 144 | 166 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 146 | 166 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.3E-24 | 175 | 198 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MDCKYKDLDF LSGNGYSMKH LAHSNSDGDC SSTSSEQSRQ DVSAVSDSSL NGQYTPIHTD 60 NNDNCGKQDQ GTIKSVLSLG NPESAFSPQK FDYSQPLACV SYPYAADSYY GGILTGYTSN 120 ANTHPNGTTN SRVPLPVEPA AEEPIFVNAK QYHAILRRRQ VRAKLEAQNK LVKARKPYLH 180 ESRHRHAMKR ARGSGGRFLN KKELQEQQKA PPSPQTPTGG VSKVGNGGNP YTANRTSKLP 240 ATPTSSGISS VSNGGGMLAH QGHISFSSTN FVPSMNFSAQ NRGEKMAVNG VPYRASTVR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 7e-23 | 142 | 217 | 2 | 77 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 182 | 191 | RHRHAMKRAR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462890861 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984046.1 | 1e-138 | nuclear transcription factor Y subunit A-4 isoform X2 | ||||
TrEMBL | A0A0A9GKR9 | 1e-149 | A0A0A9GKR9_ARUDO; Uncharacterized protein | ||||
STRING | Si036728m | 1e-135 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1373 | 38 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54160.1 | 4e-35 | nuclear factor Y, subunit A5 |