PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462888637
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 600aa    MW: 66766.2 Da    PI: 8.1073
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462888637genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.1e-23139240199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd+ ++g +++p++ ae++       ++ +  s++l+ +d +g +W++++iyr++++r++lt+GW++F + ++L  gD v+F   + s++el+
  462888637 139 FCKTLTASDTRTHGGFSVPRRAAEDCfppldyeQLRP--SQELIAKDIHGTKWKFRHIYRGQPRRHLLTTGWSSFINKKKLALGDAVLFL--RGSDGELR 234
                99****************************9866664..459************************************************..449999** PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++v+r+
  462888637 235 LGVRRA 240
                ***996 PP
2Auxin_resp103.82.1e-34265345182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a++++++s+F+v++nPr ++seF+v+++k+ k+++ ++svG+Rfk+ fe+ed++er+ sG+v+++s++dp+ Wp+SkWr+L
   462888637 265 VAKSLDKRSIFHVCFNPRIGASEFIVPYNKFFKSFNYPFSVGTRFKVCFENEDANERS-SGLVSDISEVDPTGWPGSKWRCL 345
                 678999***************************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-42127269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.7E-38134240IPR015300DNA-binding pseudobarrel domain
CDDcd100175.37E-21137239No hitNo description
PfamPF023624.3E-21139240IPR003340B3 DNA binding domain
PROSITE profilePS5086312.872139241IPR003340B3 DNA binding domain
SMARTSM010195.8E-21139241IPR003340B3 DNA binding domain
PfamPF065076.4E-27266345IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MGGIDLNAVE ANHQAVCAEL WHACAGAGVA LPRRGSSLVR CASRRTCSAA SSTSTSASDA  60
RVVSLITTIC FPGLDTRFAH ACAIFFQADA ATDEVYARLA LVAQGKMSGK TIHEIETKER  120
NSEMEDADGE QKPRTPHMFC KTLTASDTRT HGGFSVPRRA AEDCFPPLDY EQLRPSQELI  180
AKDIHGTKWK FRHIYRGQPR RHLLTTGWSS FINKKKLALG DAVLFLRGSD GELRLGVRRA  240
IQLKNEALLE AVSSTDSKLH MLSAVAKSLD KRSIFHVCFN PRIGASEFIV PYNKFFKSFN  300
YPFSVGTRFK VCFENEDANE RSSGLVSDIS EVDPTGWPGS KWRCLLVRWD GATNLSHINR  360
VSPWEIERVG GTSSVTHCLS SSSSKRTKLC LPQGDLDTSH IGGNRRPDSM ATESFHRVLQ  420
GQELMCSRPH GVACSHSPDV PKFQTSDHRR FSADTRNCLF SDAESGLRYQ KSTEFAYQPL  480
GFSESVRFPE VLQGQEMSRV VPLYHENTSD ACTHNGRVGS SDYIHRPAAT QGHSRPWFAP  540
SAAEVRSPSS VLMFNQNMVP QPEFEGTLNL KDAYGSWCVP MEEMQRKTED WPFVQHQNHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-831537318359Auxin response factor 1
4ldw_A6e-831537318359Auxin response factor 1
4ldw_B6e-831537318359Auxin response factor 1
4ldy_A5e-831537318359Auxin response factor 1
4ldy_B5e-831537318359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462888637
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807096.10.0auxin response factor 14-like isoform X1
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A2T7EBI20.0A0A2T7EBI2_9POAL; Auxin response factor
STRINGGRMZM2G441325_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-123ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]