PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462888634

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

VOZ

Protein Properties

Length: 494aa MW: 54912.7 Da PI: 4.8479

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462888634	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	420.6	2.7e-129	187	403	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdlsl 100 p+ps+flgpkcalwdc rp+ gse+++dyc+ +ha laln++ +gt pv+rp+gidlkdg+lf al akvqgk+vgip+c+gaat+kspwna+elfdlsl 462888634 187 PSPSQFLGPKCALWDCGRPVGGSEECRDYCNPYHAGLALNDDGLGTIPVMRPRGIDLKDGPLFTALIAKVQGKNVGIPVCKGAATSKSPWNAPELFDLSL 286 89************************************************************************************************ PP VOZ 101 legetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgkv 200 lege+irewlffd+prrafesgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqpss++ewhl+eyein++dalalyrle+k++d+kksak+k+ 462888634 287 LEGESIREWLFFDTPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSSNYEWHLFEYEINDSDALALYRLEFKSSDAKKSAKSKL 386 ************************************************************************************************ PP VOZ 201 skdsladlqkklgrlta 217 ++sl+++q++++rlta 462888634 387 PSSSLNEIQQQMVRLTA 403 *************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MGAPQNSHGN NVGIPDPPSE TLRLLQLAVA EEEDDATSKL ADPRSPLPVP DSHQNLYEHG 60 HGQDGWMRNA QQQGEGAQQS LEHGVQEGCG EVAAVANAMF SDQMYFMDHE LSIDDFLRDD 120 DDYKINLPES DQGSLNNIEG IDQLEHQQFN FPSDLPSHSS YVNVNNSVQD TGDVFVHMSD 180 MLTTICPSPS QFLGPKCALW DCGRPVGGSE ECRDYCNPYH AGLALNDDGL GTIPVMRPRG 240 IDLKDGPLFT ALIAKVQGKN VGIPVCKGAA TSKSPWNAPE LFDLSLLEGE SIREWLFFDT 300 PRRAFESGNR KQRSLPDYNG RGWHESRKQV MKDFGGLKRS YYMDPQPSSN YEWHLFEYEI 360 NDSDALALYR LEFKSSDAKK SAKSKLPSSS LNEIQQQMVR LTADSPVENK RTARSKPKSN 420 QKDSRANVYP ALNTPSQASA PNSYQQPVPQ MAFLNENVVY GPHLPHSENI VYGPHLPHVY 480 SAEGSSFWNP SDRA

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MGAPQNSHGN NVGIPDPPSE TLRLLQLAVA EEEDDATSKL ADPRSPLPVP DSHQNLYEHG  60
HGQDGWMRNA QQQGEGAQQS LEHGVQEGCG EVAAVANAMF SDQMYFMDHE LSIDDFLRDD  120
DDYKINLPES DQGSLNNIEG IDQLEHQQFN FPSDLPSHSS YVNVNNSVQD TGDVFVHMSD  180
MLTTICPSPS QFLGPKCALW DCGRPVGGSE ECRDYCNPYH AGLALNDDGL GTIPVMRPRG  240
IDLKDGPLFT ALIAKVQGKN VGIPVCKGAA TSKSPWNAPE LFDLSLLEGE SIREWLFFDT  300
PRRAFESGNR KQRSLPDYNG RGWHESRKQV MKDFGGLKRS YYMDPQPSSN YEWHLFEYEI  360
NDSDALALYR LEFKSSDAKK SAKSKLPSSS LNEIQQQMVR LTADSPVENK RTARSKPKSN  420
QKDSRANVYP ALNTPSQASA PNSYQQPVPQ MAFLNENVVY GPHLPHSENI VYGPHLPHVY  480
SAEGSSFWNP SDRA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462888634

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808296.1	0.0	transcription factor VOZ1-like
Swissprot	Q9SGQ0	1e-118	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2S3HAS6	0.0	A0A2S3HAS6_9POAL; Uncharacterized protein
STRING	Pavir.Ca01693.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-112	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]