PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886704
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 434aa    MW: 47932.3 Da    PI: 6.0774
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886704genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-144791147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT++E++l+++  +++G   W++I +++g  +t+ q++s+ qk+
        462886704 47 REKWTEDEHKLFLESLQLHGRA-WRRIQEHIG-SKTAVQIRSHAQKF 91
                     789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-144196IPR009057Homeodomain-like
PROSITE profilePS5129417.8464296IPR017930Myb domain
TIGRFAMsTIGR015571.9E-144594IPR006447Myb domain, plants
SMARTSM007178.4E-124694IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-84787IPR009057Homeodomain-like
PfamPF002492.5E-124790IPR001005SANT/Myb domain
CDDcd001675.46E-94992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MARFQEFEVM NDQRTAGGDV GREDHLNLPA EERGPKARKP YTISKQREKW TEDEHKLFLE  60
SLQLHGRAWR RIQEHIGSKT AVQIRSHAQK FFSKVTRESS GDANNAAAPP RIRIPPPRPK  120
RKPTHPYPRK LGNAPSKDAS VLNQLQVQSL YEQENASPKS VLTAAQLGSE TLAPDSGRSP  180
ASSLDVEERC PTPRIEVAAQ LSPYKVANSD AFSKHVKHTI PESSILTLFG KRVLVNDLNQ  240
QPNLDTGNQQ NAVDMELDAS AETPTSETGK LSSNDAAEAT TWSPCLTETE QFVYYLPQGE  300
VFVVPSDCQF FSYYNGSISC ALLSPKANKQ HQPSQAEAAD SILSNGEGSC TDSITTSSSF  360
PETLTQNSDS EEFVQVNNRD DEVIPVPGSR KCVNPAPNCL RGFVPYKKCT AESKMLQSQT  420
PGEEADREMT RLCL
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886704
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824173.10.0uncharacterized protein LOC112899782
TrEMBLA0A2S3I9P70.0A0A2S3I9P7_9POAL; Uncharacterized protein
STRINGPavir.Gb00859.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.11e-40MYB_related family protein