PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462886668
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 242aa    MW: 27419.9 Da    PI: 7.4425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462886668genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++lv  +  +G  +W+++++  g+ R++k+c++rw +yl
        462886668 14 RGPWTAEEDKKLVSFILTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.65.3e-1770111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       T+ E+++ +d++++lG++ W++Ia++++ gRt++++k++w+++
        462886668  70 LTAAEEQIVIDLHAKLGNR-WSKIAAKLP-GRTDNEIKNHWNTH 111
                      6999***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21563IPR009057Homeodomain-like
PROSITE profilePS5129414.11961IPR017930Myb domain
SuperFamilySSF466891.92E-2711108IPR009057Homeodomain-like
SMARTSM007177.2E-131363IPR001005SANT/Myb domain
PfamPF002493.4E-151461IPR001005SANT/Myb domain
CDDcd001676.47E-101661No hitNo description
PROSITE profilePS5129427.64562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2564117IPR009057Homeodomain-like
SMARTSM007172.6E-1566114IPR001005SANT/Myb domain
PfamPF002498.9E-1570111IPR001005SANT/Myb domain
CDDcd001675.97E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRQPCCDKQ GVKRGPWTAE EDKKLVSFIL THGRCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDVKRGLL TAAEEQIVID LHAKLGNRWS KIAAKLPGRT DNEIKNHWNT HIKKKLIKMG  120
IDPATHQPLA NSNAATSQST NTIESAKSSY SGDVQSLKEC RQETMQIPTY SYEQSSQPEQ  180
SSNNCSHDLD QMVNWRLESD LPIDEPWPNF TSSSHDELGI VADQLPWGGP TDWLLDYQDF  240
DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462886668
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820510.11e-136protein ODORANT1-like
RefseqXP_025820511.11e-136protein ODORANT1-like
RefseqXP_025820512.11e-136protein ODORANT1-like
RefseqXP_025820514.11e-136protein ODORANT1-like
RefseqXP_025820515.11e-136protein ODORANT1-like
RefseqXP_025820516.11e-136protein ODORANT1-like
RefseqXP_025820517.11e-136protein ODORANT1-like
RefseqXP_025820518.11e-136protein ODORANT1-like
RefseqXP_025820519.11e-136protein ODORANT1-like
RefseqXP_025820520.11e-136protein ODORANT1-like
RefseqXP_025820521.11e-136protein ODORANT1-like
RefseqXP_025820522.11e-136protein ODORANT1-like
RefseqXP_025820523.11e-136protein ODORANT1-like
SwissprotQ50EX63e-88ODO1_PETHY; Protein ODORANT1
TrEMBLA0A3L6PP211e-137A0A3L6PP21_PANMI; Protein ODORANT1-like
STRINGPavir.Fb02321.1.p1e-135(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.15e-83myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]