PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462886115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 222aa MW: 25130.6 Da PI: 9.6886 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.6 | 1.1e-48 | 11 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kg 97 +ppGfrFhP+d+elv +yL +k++g+ + v + +vd++k+ePwdLp ewyfFs rd+ky+ g+r+nrat+sgyWkatgkd++v++ ++ 462886115 11 MPPGFRFHPRDDELVLDYLLQKLSGSARAHSGVaMVDVDLNKCEPWDLP--------EWYFFSLRDRKYTVGDRTNRATRSGYWKATGKDRPVIAGedES 102 79***********************997666767**************9........8************************************986666 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 ++vg++ktLvfy+grapkg+kt+Wvmhe+rl 462886115 103 AAVGTRKTLVFYRGRAPKGRKTEWVMHEFRL 133 77***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-53 | 2 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.933 | 11 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-26 | 12 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MSSISMMEAR MPPGFRFHPR DDELVLDYLL QKLSGSARAH SGVAMVDVDL NKCEPWDLPE 60 WYFFSLRDRK YTVGDRTNRA TRSGYWKATG KDRPVIAGED ESAAVGTRKT LVFYRGRAPK 120 GRKTEWVMHE FRLTAPASQL QIPVTRQYGL KEDWVLCRVF YKSMTTTQRP PSEDKAGMPS 180 SEPHLPATPP VAPLITTYNA FDGSQTAAEQ GRESKPESVR KV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-43 | 8 | 163 | 12 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462886115 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ274479 | 4e-94 | GQ274479.1 Eragrostis tef microsatellite CNLTs186 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002443999.1 | 8e-94 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 2e-63 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | C5YIE8 | 2e-92 | C5YIE8_SORBI; Uncharacterized protein | ||||
STRING | Sb07g005610.1 | 3e-93 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 1e-66 | NAC family protein |