PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880794
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 738aa    MW: 79738.7 Da    PI: 7.6596
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880794genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.21.7e-2460161199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +++el+
  462880794  60 FCKTLTASDTSTHGGFSVPRRAAEDCfapldynQLRP--SQELVAKDLHGAQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVSGDAVLFL--RGDDGELR 155
                99****************************9876665..459************************************************..3489999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++v+r+
  462880794 156 LGVRRA 161
                **9986 PP
2Auxin_resp71.72.3e-243263891882
  Auxin_resp  18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 ra+ se++++++k++k+l+++v+ G+R+ ++ e+ed++err sG++vg+s++d+++Wp+SkWrsL
   462880794 326 RATGSEYIIPYRKFLKSLNHPVCTGTRINFQCENEDVNERR-SGMIVGISEVDSMKWPGSKWRSL 389
                 7889*************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-4252198IPR015300DNA-binding pseudobarrel domain
CDDcd100172.14E-2158160No hitNo description
Gene3DG3DSA:2.40.330.103.4E-3758161IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-2260161IPR003340B3 DNA binding domain
PROSITE profilePS5086313.25360162IPR003340B3 DNA binding domain
SMARTSM010199.0E-2360162IPR003340B3 DNA binding domain
PfamPF065076.2E-20326389IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MTGSHGCVQA DAATDEVYAR LALVAEGEAF ERNLHGGGAE GKDDIEDGDA GRKSGMLHMF  60
CKTLTASDTS THGGFSVPRR AAEDCFAPLD YNQLRPSQEL VAKDLHGAQW KFRHIYRGQP  120
RRHLLTTGWS SFVNRKKLVS GDAVLFLRGD DGELRLGVRR AIQLKNEALF KDFSCNSSKR  180
NTLSAVADSV KHRSVFHISY IPRQLCHHYN TGMGSSAAPT LLPDLQCSSP PLPHFLPAKV  240
DGSGKDNHRA AATVAGSKSS LLQTRGTRPP SPSSTRFAMA AGHREDEDLG KHDVVGVAMY  300
SAESEAMAIS MPLNPESMLW LRLPARATGS EYIIPYRKFL KSLNHPVCTG TRINFQCENE  360
DVNERRSGMI VGISEVDSMK WPGSKWRSLL VRWEDGTDCN SQGRVSPWDI EIVGGSVSVA  420
HPLPSSSSKR TKLCSQGNLD VPTMWNGCTD SVETGKLPRV LQGQELVGFR THVSCAPQTA  480
EVAPFQSSNA RRFLTNARGC ILSSPTSRFA VQNSGFTYQS VGFSESSGFS EVLQGQEISQ  540
AVPMFQGMMS EACSVKGRYG LHGFMHTSAA VNGLSAAAQE FSLTLSASPA AQVPSPYPNH  600
VFNQSVVSQR GLASKTDGEG ANGSQPNPFD MLWGRTRPLH ETPGQVSMEQ LETIRASAPE  660
DAARLGAAGG GGREVRKTSC RLFGFSLNDK MLPADDDGVK EGNYETECQN PRMLDLFGYN  720
CSTPGAALPA LCAAPLGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A7e-51920383267Auxin response factor 1
4ldw_A7e-51920383267Auxin response factor 1
4ldw_B7e-51920383267Auxin response factor 1
4ldx_A7e-51920383267Auxin response factor 1
4ldx_B7e-51920383267Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462880794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969978.10.0auxin response factor 3 isoform X2
SwissprotQ5JMM11e-158ARFC_ORYSJ; Auxin response factor 3
TrEMBLA0A0A9CRD80.0A0A0A9CRD8_ARUDO; Auxin response factor
STRINGSi000542m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.17e-75ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]