PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462880588 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MYB | ||||||||
Protein Properties | Length: 165aa MW: 18182.5 Da PI: 9.797 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.9 | 1.3e-14 | 20 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+ Ed l+ vk++G+ +Wk+I++ ++ gR k+c++r+ ++l 462880588 20 KSAWTKSEDAVLLAQVKLYGPQNWKAISAALP-GRNSKSCRLRYCQHL 66 579*****************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 41.2 | 3.7e-13 | 75 | 117 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +++++ ++ ++ W+tIa +++ gRt++ +k+rw+++ 462880588 75 AFTAKEDARILHYQSLFTNK-WATIAGYFP-GRTDNAIKNRWNSV 117 69******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.479 | 15 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.93E-28 | 17 | 114 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-13 | 19 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-13 | 20 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-19 | 22 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.88E-13 | 22 | 66 | No hit | No description |
SMART | SM00717 | 5.1E-10 | 72 | 120 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.608 | 74 | 122 | IPR017930 | Myb domain |
CDD | cd00167 | 2.43E-9 | 75 | 118 | No hit | No description |
Pfam | PF00249 | 1.9E-11 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-17 | 81 | 119 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MAVPDEASVG GRAERQPMKK SAWTKSEDAV LLAQVKLYGP QNWKAISAAL PGRNSKSCRL 60 RYCQHLDPDV DAATAFTAKE DARILHYQSL FTNKWATIAG YFPGRTDNAI KNRWNSVLRK 120 QVQQQQTQHQ ASTVEMLVAS RTARLVSDGT TPSPAHCGDS GTCHL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 18 | 122 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462880588 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798530.1 | 5e-53 | myb-related protein 308-like | ||||
Swissprot | Q9SN12 | 8e-30 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A3L6SC90 | 1e-51 | A0A3L6SC90_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Hb01126.1.p | 4e-52 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 5e-32 | myb domain protein 77 |
Publications ? help Back to Top | |||
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