PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462879680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | WRKY | ||||||||
Protein Properties | Length: 242aa MW: 25603.5 Da PI: 6.0351 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 83.9 | 1.6e-26 | 59 | 117 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s gC+++k vers p v+++tY +H h+ 462879680 59 SDPWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLIVTYMADHCHP 117 699***********************9988***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 3.66E-24 | 57 | 119 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-26 | 57 | 119 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-30 | 58 | 118 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.874 | 59 | 119 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-22 | 60 | 117 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MISFPAAAVA STSGSQSTAV APGRKAGART TRPKRSSKKS QLKKVVREMP VADGGVSSSD 60 PWAWRKYGQK PIKGSPYPRG YYKCSSMKGC MARKLVERSP AKPGVLIVTY MADHCHPVPT 120 QLNALAGTTR HSKPSAGEDR PASTSPKRHE QQQQGTAADD EAAAARCDAD SNEASTTTTA 180 PVAADCGGGV EELAAALADD DGEFWPAGMD LDELLAPVDD DFDFEHVLDD DDDGVLGRRL 240 SL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-18 | 39 | 120 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 1e-18 | 39 | 120 | 2 | 80 | Disease resistance protein RRS1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462879680 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY676924 | 4e-97 | AY676924.1 Oryza sativa (indica cultivar-group) transcription factor WRKY03 (WRKY03) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002458190.1 | 1e-112 | probable WRKY transcription factor 27 | ||||
TrEMBL | A0A1E5UWP3 | 1e-112 | A0A1E5UWP3_9POAL; WRKY transcription factor 22 | ||||
STRING | Sb03g028440.1 | 1e-112 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4279 | 30 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 4e-37 | WRKY family protein |