PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462878944
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 481aa    MW: 55888 Da    PI: 9.4041
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462878944genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.2e-08284324346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +WT+eE e + + v+  G++ W++ a+++g  +++ ++k+ w+ 
        462878944 284 KWTEEEYETIRRFVETNGPN-WTKLAAELG--KSDIHVKDTWRR 324
                      8*****************77.********8..9*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-6207282IPR009057Homeodomain-like
SMARTSM007170.031208279IPR001005SANT/Myb domain
PROSITE profilePS500904.762211277IPR017877Myb-like domain
SuperFamilySSF466892.12E-11257338IPR009057Homeodomain-like
PROSITE profilePS5129410.854277330IPR017930Myb domain
SMARTSM007177.2E-4281328IPR001005SANT/Myb domain
CDDcd001670.00621284326No hitNo description
Gene3DG3DSA:1.10.10.603.5E-10284336IPR009057Homeodomain-like
PfamPF139211.3E-9285343No hitNo description
PROSITE profilePS500908.188327395IPR017877Myb-like domain
SMARTSM007170.01331397IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-8337395IPR009057Homeodomain-like
SuperFamilySSF466895.35E-9375453IPR009057Homeodomain-like
PROSITE profilePS500908.223397450IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.6E-4398451IPR009057Homeodomain-like
SMARTSM007172.5401452IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MVEENDGSVR ESEDKTKLDK KRRKKKKRDE AEGDDGVVFE SEKCSVTLEE GKQLDMSKGE  60
HKKREDKRKR KESGNVGQDV GRNTQAAGDV KSGNEERKKS KDTNEGGEME KEKVGKRKDK  120
GKRVSFIDAV EVFGDGDFGS DEETKARDLN VADGTEFDQK KEKKKKKKAK KDVMGEENGG  180
SVRESEDKTK SDKKRRKKKK RDESELVHGK RFTPEENAKL MEAMMNYAEM KQLGDQGLEM  240
LRTSVKHPEL RGCWAEIANA LPHRPPVAVY KRARILLNRS ADRKWTEEEY ETIRRFVETN  300
GPNWTKLAAE LGKSDIHVKD TWRRIKPKNL KKGTWTQDEY QNLFDLVNLD LRVKAHQQLD  360
HGHRLIRDNI SWEAISDKLT TRSNKDCCLK WYRQLASPLV KEGVWSDTDD YMLVEALQKV  420
DAVCPEDVDW DNLLDHRSGE LCRQRWNQMV RLLGGHREKS FIEQVEVLSR RYCPEMVEYR  480
K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192196KKRRK
2192197KKRRKK
3192200KKRRKKKKR
4194200RRKKKKR
5194201RRKKKKRD
6195200RKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMap462878944
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811599.10.0RNA polymerase I termination factor-like isoform X2
RefseqXP_025811600.10.0RNA polymerase I termination factor-like isoform X2
TrEMBLA0A2S3HM590.0A0A2S3HM59_9POAL; Uncharacterized protein
STRINGPavir.Da01599.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.17e-94MYB_related family protein