PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462878696
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family HSF
Protein Properties Length: 587aa    MW: 66322.5 Da    PI: 4.8537
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462878696genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-341782692102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+++ll++i+
     462878696 178 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIRGHTHLLKNIH 265
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     462878696 266 RRKP 269
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.22E-36173267IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.9E-63174267IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-38174267IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-30178267IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-19178201IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-19216228IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340217241IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-19229241IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
LLTRSSSRVS LACLPPAATL VELPACVTVV VSVRQESQSS HDPIVCEKKW PDRIGANSRD  60
LVRFWEVIFL HQVVLFSPLL LLVQVELDRP KGRCLYGTSV RISATVECEL GATSPFWWWL  120
RLWEAALRPS YSLHPSLVGL VDTDRPLALL GRETEDAGME ASQSHGGGGG GSSSPPPFLI  180
KTYEMVEDPA TNHVVSWGPG GASFVVWNPP DFSRDLLPKY FKHNNFSSFI RQLNTYGFRK  240
IDPERWEFAN EDFIRGHTHL LKNIHRRKPV HSHSLQNQVN GPLAESERRE YEDEINRLKY  300
EKSLLLADLQ RQNQQHSGIN WQMQLLEDRL MQMEQRQKNI IASLSDILQR NGVASGTLLE  360
TDHFSKKRRV PKIDFCVNDP TIEEQQVPFL QVMGAVTETP SMFPEPFDRM EMSLISLEKF  420
IQRASDESGE DMFTGSAEPS PGVTLGQMHP EPVETNINLQ ESSCYVQSPV LPLPDLEEDA  480
HRTAEADMNS DTTTADTSQD EATTETGLSH EPTKVNDIFW ERFLTETPKF YRADEAESGR  540
QGEECKTEPI EAKEDLKIAV DCSFLHHRDK VDQITQQMGQ LASAENA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2516626717129Heat shock factor protein 1
5d5v_B7e-2516626717129Heat shock factor protein 1
5d5v_D7e-2516626717129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462878696
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961415.10.0heat stress transcription factor A-4d
SwissprotQ93VB51e-168HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLK3Z6570.0K3Z657_SETIT; Uncharacterized protein
STRINGSi022026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.16e-74heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]