PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462877364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 24692.1 Da PI: 8.5913 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84.5 | 2.1e-26 | 2 | 68 | 65 | 128 |
NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128 d+ky+tg r+nrat++gyWkatgkd+e++ + +++ g+kktLvfykgrapkg+kt+Wvmheyrl 462877364 2 DRKYPTGFRANRATEAGYWKATGKDREIYLEASSVpvlLGMKKTLVFYKGRAPKGVKTNWVMHEYRL 68 79****************************855546669**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 33.982 | 1 | 104 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-29 | 2 | 104 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-11 | 11 | 68 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MDRKYPTGFR ANRATEAGYW KATGKDREIY LEASSVPVLL GMKKTLVFYK GRAPKGVKTN 60 WVMHEYRLDG QGRVPCAASS SNTKSKKPCS SSKEEWVVCR VFDKSLGVIR KEAESAPVPA 120 LVSTPPYRSN MSTGDTDLRS MNFPVPTQFP MGIQDFNMNS NGLHSIMGDS SASYYSADHM 180 GTSVPSPLLP SLLPMDVGVC PGQIDDADIS SVVNPRHVTS STEDMV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-23 | 2 | 105 | 80 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-23 | 2 | 105 | 80 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-23 | 2 | 105 | 80 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-23 | 2 | 105 | 80 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-23 | 2 | 105 | 83 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-23 | 2 | 105 | 83 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-23 | 2 | 105 | 83 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-23 | 2 | 105 | 83 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-23 | 2 | 105 | 83 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-23 | 2 | 105 | 83 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-23 | 2 | 105 | 83 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-23 | 2 | 105 | 83 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-23 | 2 | 105 | 80 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-23 | 2 | 105 | 80 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462877364 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801540.1 | 3e-52 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9FLJ2 | 4e-37 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1E5V4C4 | 7e-57 | A0A1E5V4C4_9POAL; NAC domain-containing protein 79 | ||||
STRING | Si030284m | 1e-49 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 7e-38 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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