PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462876063 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | CPP | ||||||||
Protein Properties | Length: 107aa MW: 12381.1 Da PI: 8.4397 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 39.6 | 1e-12 | 10 | 46 | 5 | 41 |
TCR 5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +C+C++ +C+++YC Cf ++ +Cs+ C+Ce C N+e+ 462876063 10 SCSCRNARCIQRYCHCFGNRWYCSDACRCEACWNTES 46 7*********************************986 PP | |||||||
2 | TCR | 29.5 | 1.5e-09 | 85 | 106 | 1 | 22 |
TCR 1 kekkgCnCkkskClkkYCeCfa 22 ++ kgC+C+ks+C k+YCeCf+ 462876063 85 RHVKGCTCRKSECRKNYCECFK 106 589******************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.3E-7 | 6 | 47 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 21.713 | 7 | 107 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.1E-9 | 10 | 45 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.0E-6 | 88 | 106 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MGDDEGPRPS CSCRNARCIQ RYCHCFGNRW YCSDACRCEA CWNTESRAAF VEERAEIILK 60 NKPGAFQSKI ARDGDPSVPG KEQRRHVKGC TCRKSECRKN YCECFKW |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462876063 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004969151.1 | 2e-33 | protein tesmin/TSO1-like CXC 3 isoform X1 | ||||
TrEMBL | A0A368R9B5 | 3e-32 | A0A368R9B5_SETIT; Uncharacterized protein | ||||
TrEMBL | K3XLU8 | 5e-32 | K3XLU8_SETIT; Uncharacterized protein | ||||
STRING | Si002871m | 8e-33 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12267 | 23 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04850.1 | 4e-17 | Tesmin/TSO1-like CXC domain-containing protein |