PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462875585

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

ARF

Protein Properties

Length: 1229aa MW: 135644 Da PI: 6.6727

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462875585	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.9	1.6e-22	141	242	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l+ 462875585 141 FCKTLTASDTSTHGGFSVPRRSAEKIfppldfsM-QPPA-QEIQARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDEKQQLL 236 99***************************954.4444.48*********************************************..5688889 PP EEEE-S CS B3 94 vkvfrk 99 ++++r+ 462875585 237 LGIRRA 242 ***997 PP
2	Auxin_resp	118.2	6.9e-39	267	350	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ 462875585 267 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 350 79********************************9*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.44E-42	130	270	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.2E-41	133	256	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.50E-19	140	232	No hit	No description
SMART	SM01019	2.4E-22	141	243	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.829	141	243	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.8E-20	141	242	IPR003340	B3 DNA binding domain
Pfam	PF06507	1.2E-33	267	350	IPR010525	Auxin response factor
Pfam	PF02309	1.7E-9	1012	1098	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	27.448	1013	1097	IPR000270	PB1 domain
SuperFamily	SSF54277	2.55E-7	1025	1092	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1229 aa Download sequence Send to blast
MMKQQQQPAS SAGPTAGGGG ASAVCAGEKK APTINSELWH ACAGPLVSLP PAGSLVVYFP 60 QGHSEQVAAS MQKDVDAHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ MTLQPVTSYG 120 KEALQLSELA LKQPRPQTEF FCKTLTASDT STHGGFSVPR RSAEKIFPPL DFSMQPPAQE 180 IQARDLHDNI WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR 240 RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VVPFAKYQKA 300 LYGNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE 360 RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP 420 QTQNTIMPGL SLVQWMNMNM QQNSSFANTA VQSEYLRSLS NPNMQNLGAS DLSRQLCLQN 480 QILQQNNIQF NSPKLPQQMQ PINELPKAAL AQNQLVGGIK PQEQTQEPSN LQRQQQSLNQ 540 LLPLSQSQTS LVQAQVLAQS QMQQQQPPSV TQNLKPATSQ PLLLPHQQQQ QQQQQQQQPK 600 LLQQQQQQQQ QLLLQQQQLQ QQSQLNKMPA QVQNLVNQQM QLPDQQLQLQ LLQKLQQQQQ 660 SLLSQPGVTL AQLPLIQEQQ KLFLDVQQQL SNSHSLSQQQ TMPQQSTKVA SQATPPPPAM 720 QQESPQKLPQ KHVGFADSSQ AAIPPPTSVN IVSGAGSPLM TTGATHSVLT EEIPSCSTSP 780 STANGNHLLQ PVLGRNKQCG MMNNEKVPQS NAPMSIPCSL EAIMAPARLT KESPKLNSSV 840 KQSLMTSKPP NAGTGPQNFV NGVPPTDYLE TASSATSVWL SQTDGLLHQG FPMSNFNQQQ 900 MFKDAPPETE IQGADASNHA LFGINSDGQL GFPMGADGFL SNGIDAAKYE NHISTDIDGN 960 YRIPKDAQQE ISSSMVSQSI GASDMAFNSI DSAINDGAFR TSWPPAAPLK RMRTFTKVYK 1020 RGAVGRSIDI SQFSGYDELK HALARMFSIE GQLEERQRIG WKLVYKDHED DILLLGDDPW 1080 EEFVNCVKCI RILSPQEVQQ MSLDGDLGNN ILPNQACSSS DGGNAWRARC DQNSGNPSTG 1140 SYDQFPHMEV GMIIQPHCQY NSSRGDLGNN ILPNQACSSS DGGNAWRARC DQNSGNPSTG 1200 SYDQFPHMEV GMIPADEKNL ELSHRSTAR

Sequence ? help Back to Top

Protein Sequence Length: 1229 aa Download sequence Send to blast

MMKQQQQPAS SAGPTAGGGG ASAVCAGEKK APTINSELWH ACAGPLVSLP PAGSLVVYFP  60
QGHSEQVAAS MQKDVDAHVP SYPNLPSKLI CLLHNVTLHA DPETDEVYAQ MTLQPVTSYG  120
KEALQLSELA LKQPRPQTEF FCKTLTASDT STHGGFSVPR RSAEKIFPPL DFSMQPPAQE  180
IQARDLHDNI WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVIFVRD EKQQLLLGIR  240
RANRQPTNIS SSVLSSDSMH IGILAAAAHA AANNSPFTIF YNPRASPTEF VVPFAKYQKA  300
LYGNQISLGM RFRMMFETEE LGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESAAGE  360
RRNRVSIWEI EPVAAPFFIC PPPFFGAKRP RQLDDESSEM ENLLKRAMPW LGEEICIKDP  420
QTQNTIMPGL SLVQWMNMNM QQNSSFANTA VQSEYLRSLS NPNMQNLGAS DLSRQLCLQN  480
QILQQNNIQF NSPKLPQQMQ PINELPKAAL AQNQLVGGIK PQEQTQEPSN LQRQQQSLNQ  540
LLPLSQSQTS LVQAQVLAQS QMQQQQPPSV TQNLKPATSQ PLLLPHQQQQ QQQQQQQQPK  600
LLQQQQQQQQ QLLLQQQQLQ QQSQLNKMPA QVQNLVNQQM QLPDQQLQLQ LLQKLQQQQQ  660
SLLSQPGVTL AQLPLIQEQQ KLFLDVQQQL SNSHSLSQQQ TMPQQSTKVA SQATPPPPAM  720
QQESPQKLPQ KHVGFADSSQ AAIPPPTSVN IVSGAGSPLM TTGATHSVLT EEIPSCSTSP  780
STANGNHLLQ PVLGRNKQCG MMNNEKVPQS NAPMSIPCSL EAIMAPARLT KESPKLNSSV  840
KQSLMTSKPP NAGTGPQNFV NGVPPTDYLE TASSATSVWL SQTDGLLHQG FPMSNFNQQQ  900
MFKDAPPETE IQGADASNHA LFGINSDGQL GFPMGADGFL SNGIDAAKYE NHISTDIDGN  960
YRIPKDAQQE ISSSMVSQSI GASDMAFNSI DSAINDGAFR TSWPPAAPLK RMRTFTKVYK  1020
RGAVGRSIDI SQFSGYDELK HALARMFSIE GQLEERQRIG WKLVYKDHED DILLLGDDPW  1080
EEFVNCVKCI RILSPQEVQQ MSLDGDLGNN ILPNQACSSS DGGNAWRARC DQNSGNPSTG  1140
SYDQFPHMEV GMIIQPHCQY NSSRGDLGNN ILPNQACSSS DGGNAWRARC DQNSGNPSTG  1200
SYDQFPHMEV GMIPADEKNL ELSHRSTAR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-166	26	371	44	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462875585

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008645044.1	0.0	auxin response factor 19 isoform X1
Swissprot	Q0D9R7	0.0	ARFS_ORYSJ; Auxin response factor 19
TrEMBL	A0A2T7DUH3	0.0	A0A2T7DUH3_9POAL; Auxin response factor
STRING	Sb10g029130.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1409	35	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang S, et al. The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1. Plant Cell Environ., 2015. 38(4): p. 638-54 [PMID:24995795]