PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462873087
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 340aa    MW: 36889.9 Da    PI: 10.6557
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462873087genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-11348146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W ++Ed  l + v+ +G+++W++I ++  + Rt+k+c++rw +
        462873087  3 KGPWNADEDAVLREHVRTHGPRDWSSIRSKGLLPRTGKSCRLRWVN 48
                     79*************************8876677**********87 PP
2Myb_DNA-binding41.62.8e-135999345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++++eE+   +d+ +q G++ W++Ia +++ gRt++++k++w 
        462873087 59 KFSAEEERVVLDLQEQIGNK-WARIATYLP-GRTDNDVKNFWS 99
                     79******************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.062154IPR017930Myb domain
SMARTSM007171.2E-10252IPR001005SANT/Myb domain
SuperFamilySSF466892.58E-26298IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-18457IPR009057Homeodomain-like
CDDcd001673.63E-11550No hitNo description
PfamPF139216.1E-10656No hitNo description
PROSITE profilePS5129416.00155106IPR017930Myb domain
SMARTSM007179.8E-1156104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-1758104IPR009057Homeodomain-like
PfamPF002494.1E-115999IPR001005SANT/Myb domain
CDDcd001672.02E-95998No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MRKGPWNADE DAVLREHVRT HGPRDWSSIR SKGLLPRTGK SCRLRWVNKL RPNLKSGCKF  60
SAEEERVVLD LQEQIGNKWA RIATYLPGRT DNDVKNFWST RQKKIARLLR SPLPARSGKN  120
RRAKAAVNSS LESGVSRLTL GPFLDQVPFD GSSSSGQCRA ATSFMDAQNA ALVPYDQTSS  180
QLLGFEGARL LHMPYPGRFG KNLSSKAAGA SSLEPRLTLG PLLDHVPFEG SSSSGQCCAA  240
TSFVDAQSTA LVPYHQTGSQ LLGFEGALLP GVPAIDSQAC SANARPLPDM TDSHVKNFGC  300
TREKRPAGLL LRTPLPAAPS RNRSVKTEAT SSLQSQPTVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-25110525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap462873087
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630003e-40AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316133e-40AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149603e-40AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126123e-40CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552183e-40CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824013.16e-97probable transcription factor MYB58
SwissprotQ0JB893e-76MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A2S3I9S81e-95A0A2S3I9S8_9POAL; Uncharacterized protein
STRINGPavir.Gb01130.1.p1e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-61MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]