PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462867824

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

C3H

Protein Properties

Length: 644aa MW: 69127.4 Da PI: 5.0097

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462867824	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	452	467	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 G C++Gd+CkF+H+ 462867824 452 VS-GKCSRGDKCKFSHV 467 44.*************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.15	388	415	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.015	389	414	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-5	389	413	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.5E-6	417	443	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.887	417	444	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.3E-4	418	442	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.03E-6	419	442	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.038	445	468	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-4	447	467	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.155	447	469	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MEDALVPPPD PVAATDAAVL TRRRSHLDSA SYRTLSRLFA HCFHLHPSRR EAPAPPEAEP 60 ATSKXXXXEF GDSPQAPEDA DFDRRKDVEK EAVSAGSSPR QETVSPVMDR PVLAKPTGVP 120 GETLQGSLED AGELFVKSTC SKAGDGGEEL GVDAGLLVED EALKSVKSCL EGEIDESMEA 180 VGHENGQLLD AMMTNFTGLI DDVGAGSVPE QSCAILGGEL QNIDEESKQL GDGVEEDGPA 240 GNSGYGKVDV GGFEEGEIEG ELQDLDAEES GDSEPADENA DGEEQGRDSV SKGSGANESC 300 DHDTRCGNVH LTPEMCATRA QAVSYDEVLD WNETPLPDDE DLKPGKKRKR NLTEERKAKK 360 TKNKRIKRAQ QRIAEGVHKL KLQPVIKPKE VKPCHFYNHG KCQQGDSCKF SHDFIPSTKS 420 KACKHFASGS CLKGDDCPFD HELLKYPCHK YVSGKCSRGD KCKFSHVLSS TDGTSTTDVK 480 KSDAPLAFGK TNLTGQAGSQ KTSSVHSGEP MISAPSKQQY SILKTLAGIS INSQGASTRI 540 PKGVQFLPFG RDGSNSSSVH QDLSAEKHRN ANGTRNQFAG HQAEGQKIVT QNDQKPVKPL 600 DVKDSLKEAT LPTDSTATPG SIHTQSEVSE ASRILQDFLF GVGS

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MEDALVPPPD PVAATDAAVL TRRRSHLDSA SYRTLSRLFA HCFHLHPSRR EAPAPPEAEP  60
ATSKXXXXEF GDSPQAPEDA DFDRRKDVEK EAVSAGSSPR QETVSPVMDR PVLAKPTGVP  120
GETLQGSLED AGELFVKSTC SKAGDGGEEL GVDAGLLVED EALKSVKSCL EGEIDESMEA  180
VGHENGQLLD AMMTNFTGLI DDVGAGSVPE QSCAILGGEL QNIDEESKQL GDGVEEDGPA  240
GNSGYGKVDV GGFEEGEIEG ELQDLDAEES GDSEPADENA DGEEQGRDSV SKGSGANESC  300
DHDTRCGNVH LTPEMCATRA QAVSYDEVLD WNETPLPDDE DLKPGKKRKR NLTEERKAKK  360
TKNKRIKRAQ QRIAEGVHKL KLQPVIKPKE VKPCHFYNHG KCQQGDSCKF SHDFIPSTKS  420
KACKHFASGS CLKGDDCPFD HELLKYPCHK YVSGKCSRGD KCKFSHVLSS TDGTSTTDVK  480
KSDAPLAFGK TNLTGQAGSQ KTSSVHSGEP MISAPSKQQY SILKTLAGIS INSQGASTRI  540
PKGVQFLPFG RDGSNSSSVH QDLSAEKHRN ANGTRNQFAG HQAEGQKIVT QNDQKPVKPL  600
DVKDSLKEAT LPTDSTATPG SIHTQSEVSE ASRILQDFLF GVGS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462867824

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969019.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_022682856.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_022682857.1	0.0	zinc finger CCCH domain-containing protein 7
Refseq	XP_022682858.1	0.0	zinc finger CCCH domain-containing protein 7
Swissprot	Q657B3	1e-174	C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBL	A0A1E5UVI4	0.0	A0A1E5UVI4_9POAL; Zinc finger CCCH domain-containing protein 7
STRING	Pavir.Eb02489.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8838	37	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G08505.2	7e-06	C3H family protein

Publications ? help Back to Top
Noller B,Fischer I Photodissociation dynamics of the 2-propyl radical, C3H7. J Chem Phys, 2007. 126(14): p. 144302 [PMID:17444707] Ali MA,Dillstrom VT,Lai JY,Violi A Ab initio investigation of the thermal decomposition of n-butylcyclohexane. J Phys Chem A, 2014. 118(6): p. 1067-76 [PMID:24344976]