PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462867737 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21639.9 Da PI: 9.2365 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.2 | 9.1e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+n nrqvtfskRr+g+lKKA+EL vLCd++ av ifs++gkl+eys+ 462867737 9 KRIDNRVNRQVTFSKRRKGLLKKAHELAVLCDVQLAVFIFSERGKLFEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 41.9 | 4.4e-15 | 81 | 144 | 9 | 72 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 ++++ ++l e+a+L +e e+L++++R +GedL+sLs+ eL +Leq L++ l+k+R++K 462867737 81 EAHRQDQQLLMEMARLTNEKEQLESNIRISKGEDLSSLSVDELSELEQYLQSVLSKVRARKILS 144 34556778889**************************************************654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.6E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 30.417 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.58E-29 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.31E-35 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 3.7E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.7E-13 | 82 | 179 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.469 | 86 | 185 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MGRGRVELKR IDNRVNRQVT FSKRRKGLLK KAHELAVLCD VQLAVFIFSE RGKLFEYSNP 60 PCSMSDLIRR YEIASNTQLH EAHRQDQQLL MEMARLTNEK EQLESNIRIS KGEDLSSLSV 120 DELSELEQYL QSVLSKVRAR KILSSLIEVT NCLWQHELQT QLLDDLRRKV LIVNHEQSHV 180 VMQTR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-17 | 1 | 83 | 1 | 76 | MEF2C |
5f28_B | 4e-17 | 1 | 83 | 1 | 76 | MEF2C |
5f28_C | 4e-17 | 1 | 83 | 1 | 76 | MEF2C |
5f28_D | 4e-17 | 1 | 83 | 1 | 76 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462867737 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811394.1 | 5e-62 | MADS-box transcription factor 30-like | ||||
Swissprot | Q8VWM8 | 5e-56 | M17_MAIZE; MADS-box protein ZMM17 | ||||
TrEMBL | A0A2S3HH79 | 3e-60 | A0A2S3HH79_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7DVG8 | 3e-60 | A0A2T7DVG8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J10823.1.p | 6e-60 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-32 | AGAMOUS-like 8 |