PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462866300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NF-YB | ||||||||
Protein Properties | Length: 152aa MW: 16500.5 Da PI: 4.9196 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 111.6 | 4.5e-35 | 1 | 85 | 10 | 94 |
NF-YB 10 ianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 +an++r+m++v+Pa+ kis ak+++++c++ef++fv++eas+ + +++r+ti+++d+ wa+ lG++dyv+p+++y+++yre++ 462866300 1 MANLVRLMRQVIPAQVKISTRAKQLTHDCAVEFVGFVGGEASECAVEQHRRTIAPEDFTWAFERLGLDDYVDPMTTYISRYRETQ 85 79*********************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 9.2E-12 | 1 | 61 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.0E-24 | 2 | 86 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 3.02E-22 | 2 | 86 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MANLVRLMRQ VIPAQVKIST RAKQLTHDCA VEFVGFVGGE ASECAVEQHR RTIAPEDFTW 60 AFERLGLDDY VDPMTTYISR YRETQNVLGG ASCSFAPAPA AAGGPCSFTV EEMQFLRSVV 120 PPPHGGYDGA ASSSEQPAPP LAERSYGYDG HM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 2e-25 | 1 | 83 | 15 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269|PubMed:11971906}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462866300 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822765.1 | 1e-52 | nuclear transcription factor Y subunit B-1-like | ||||
Swissprot | Q6Z348 | 1e-38 | NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1 | ||||
TrEMBL | A0A2T8KXK0 | 3e-51 | A0A2T8KXK0_9POAL; Uncharacterized protein | ||||
STRING | Si018339m | 5e-47 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13659 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21970.1 | 1e-26 | NF-YB family protein |