PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462863710
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family ARF
Protein Properties Length: 621aa    MW: 67427.7 Da    PI: 7.0488
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462863710genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.3e-2366167199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d+ g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   + +++el+
  462863710  66 FCKTLTASDTSTHGGFSVPRRAAEDCfapldynQLRP--SQELVAKDLLGAQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVSGDAVLFL--RGDDGELR 161
                99****************************9876665..459************************************************..3489999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++v+r+
  462863710 162 LGVRRA 167
                **9986 PP
2Auxin_resp97.12.6e-32192272182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a++++++svF++ YnPra+ se++++++k++k+l+++v+ G+R+ ++ e+ed++err sG++vg+s++d+++Wp+SkWrsL
   462863710 192 VADSVKHRSVFHISYNPRATGSEYIIPYRKFLKSLNHPVCTGTRINFRCENEDVNERR-SGMIVGISEVDSMKWPGSKWRSL 272
                 57899*****************************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.84E-4159204IPR015300DNA-binding pseudobarrel domain
CDDcd100178.33E-2164166No hitNo description
Gene3DG3DSA:2.40.330.105.5E-3664167IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-2166167IPR003340B3 DNA binding domain
PROSITE profilePS5086312.92966168IPR003340B3 DNA binding domain
SMARTSM010191.0E-2066168IPR003340B3 DNA binding domain
PfamPF065073.1E-27193272IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGIDLNMVDE APPQAADAAT DEVYARLALV AEGEAFDRNL HGGGAEGEDD IDDGDAGRKS  60
GMLHMFCKTL TASDTSTHGG FSVPRRAAED CFAPLDYNQL RPSQELVAKD LLGAQWKFRH  120
IYRGQPRRHL LTTGWSSFVN RKKLVSGDAV LFLRGDDGEL RLGVRRAIQL KNEALFKDFS  180
CDSSKRHTLS AVADSVKHRS VFHISYNPRA TGSEYIIPYR KFLKSLNHPV CTGTRINFRC  240
ENEDVNERRS GMIVGISEVD SMKWPGSKWR SLLVRWEDGT DCNCQGRVSP WEIEIVGGSV  300
SVAHPLPSSS KRTKLCSGNL DVPTMWNGCT DSVETGKLPR VLQGQELMGF RTHHVSCAPQ  360
TAEVAPFQSS NARRFLTNAR GCMLNGPTSR LAVQNSGLTY QSVGFSESSG FSEVLQGQEI  420
SQAIPMFQGM MSEACSVKGR YGLHGFMHNS AAVNGLSAAA QEFSLTLSTS PAAQVPSPYP  480
NHVFNQSVVS QPGLASKTDG EGASGSQPNP FDMLWGTRTR PPHETPGQIS MEQLETRRAS  540
TPGDAARFGA AGGGGREVRK TSCRLFGFSL TDKMLPADDD GVKEGNYETE CQNPRMLDLF  600
GYNCSTPGAA LPALCTAPLG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-731629484353Auxin response factor 1
4ldy_B2e-731629484353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap462863710
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969978.10.0auxin response factor 3 isoform X2
SwissprotQ5JMM10.0ARFC_ORYSJ; Auxin response factor 3
TrEMBLA0A0A9D3G80.0A0A0A9D3G8_ARUDO; Auxin response factor
STRINGSi000542m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-116ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]