PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462859219

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

Protein Properties

Length: 559aa MW: 59605.2 Da PI: 10.1895

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462859219	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59	8.2e-19	393	489	2	95
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 +kvl++sdv+++gr+vlpkk ae h ++k++ ++ + +ed s+r+W++++++ ++ks++y+l+ ++ +Fv+ n+L+egDf+v++ ++ ++++++++ 462859219 393 QKVLKQSDVGSLGRIVLPKKEAEIHlpELKTRDGISIPMEDiGSSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRYNELQEGDFIVIY--SDvKSGKYLIR 489 79******************999999*********7788***99777777777777.******************..55588877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.0E-27	384	499	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10015	7.99E-33	390	491	No hit	No description
SuperFamily	SSF101936	3.92E-22	391	487	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	1.1E-17	392	494	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.236	392	494	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.5E-15	393	488	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009737	Biological Process	response to abscisic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MMIEDAMSAP PHPVSAGGPE GKALLEGGAG GEGACMDAPA AGEDLPRFFM EWLTNNRESI 60 SAEDLRGIRL KRSTIEAAAA RLGGGRQGTM QLLKLILTWV QNHHLQKKRP RDAMEEATAA 120 AGSHGHGQLS SPGVNAGYEF PAGGHDVQAP AGAGTSSWVP YQQPFSPPPA YGAEAVYPSG 180 AAGHGQFTFH QQGCGTSSVV VNSQAFSPPA VGDMHAPAGS WPPQQYVTFA GGASTGSYPM 240 PPPFSPGFAG QYPMGSPRMA AGVEASATKE ARKKRMARQR RLSCLQQQRS QQLSFGQIQS 300 GPLLQQEPSP RSVHSAPVTP SAGSWFWPSA GQQIRNPLSK SNSSAQMLQP AAAPPPPAKT 360 ASAARQEKSP QRAAASDKRQ GTKADKNLRF LLQKVLKQSD VGSLGRIVLP KKEAEIHLPE 420 LKTRDGISIP MEDIGSSRVW NMRYRFWPNN KSRMYLLENT GDFVRYNELQ EGDFIVIYSD 480 VKSGKYLIRG VKVRPAPEHG NGVLGKHKQG HPAERAGASG SEDGGGVDGK PDACKSRPPH 540 SVRRARQEAA AMGQMAVII

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MMIEDAMSAP PHPVSAGGPE GKALLEGGAG GEGACMDAPA AGEDLPRFFM EWLTNNRESI  60
SAEDLRGIRL KRSTIEAAAA RLGGGRQGTM QLLKLILTWV QNHHLQKKRP RDAMEEATAA  120
AGSHGHGQLS SPGVNAGYEF PAGGHDVQAP AGAGTSSWVP YQQPFSPPPA YGAEAVYPSG  180
AAGHGQFTFH QQGCGTSSVV VNSQAFSPPA VGDMHAPAGS WPPQQYVTFA GGASTGSYPM  240
PPPFSPGFAG QYPMGSPRMA AGVEASATKE ARKKRMARQR RLSCLQQQRS QQLSFGQIQS  300
GPLLQQEPSP RSVHSAPVTP SAGSWFWPSA GQQIRNPLSK SNSSAQMLQP AAAPPPPAKT  360
ASAARQEKSP QRAAASDKRQ GTKADKNLRF LLQKVLKQSD VGSLGRIVLP KKEAEIHLPE  420
LKTRDGISIP MEDIGSSRVW NMRYRFWPNN KSRMYLLENT GDFVRYNELQ EGDFIVIYSD  480
VKSGKYLIRG VKVRPAPEHG NGVLGKHKQG HPAERAGASG SEDGGGVDGK PDACKSRPPH  540
SVRRARQEAA AMGQMAVII

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9b_A	1e-37	388	498	1	111	B3 domain-containing transcription factor FUS3
6j9b_D	1e-37	388	498	1	111	B3 domain-containing transcription factor FUS3
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462859219

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ279200	1e-144	AJ279200.1 Eragrostis tef partial mRNA for transcription factor (vp1 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971015.1	0.0	regulatory protein viviparous-1
Swissprot	P26307	0.0	VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBL	K3XF30	0.0	K3XF30_SETIT; Uncharacterized protein
STRING	Si000497m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7529	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	1e-66	B3 family protein

Publications ? help Back to Top
Williamson JD,Scandalios JG Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression. Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6 [PMID:1388272] Hoecker U,Vasil IK,McCarty DR Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize. Genes Dev., 1995. 9(20): p. 2459-69 [PMID:7590227]