PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462859180
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family C3H
Protein Properties Length: 431aa    MW: 46631.8 Da    PI: 8.7489
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462859180genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-107399127
               --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
               ++++ C +++rtG C++G +C+F+H+p
  462859180 73 PGEPDCTYYLRTGLCRFGMSCRFNHPP 99
               5789*********************97 PP
2zf-CCCH38.12.6e-12120144327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C+++++tGtCk+G++CkF+H++
  462859180 120 QPECQYYLKTGTCKFGPTCKFHHPR 144
                799********************96 PP
3zf-CCCH36.58.3e-12166190327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C ++++tG+CkyG++CkF+H++
  462859180 166 EKECAYYLKTGHCKYGETCKFHHPE 190
                679********************96 PP
4zf-CCCH38.52e-12319344227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++++tG Ck+G  CkF+H++
  462859180 319 DQPECQYYMKTGDCKFGVVCKFHHPR 344
                689*********************96 PP
5zf-CCCH42.61e-13364390127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++elC+f++r+G+Ck+G++CkF H++
  462859180 364 PGEELCKFYSRYGICKFGANCKFDHPM 390
                689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-57299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.97172100IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-87499IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-577100IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-47898IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6117144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694117145IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-10120144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6121146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5123145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356163191IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5163190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6163190IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9166190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5169189IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404317345IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9319344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.59E-5320344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-4323343IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8363390IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591363391IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6365390IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-11365390IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5367388IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MAAAPSPAAI AATAPAAVTV TAAPVPPPPS VTTAAAADTS SPDPAALYEE GMWQQMAMNS  60
GATMQPGPYP ERPGEPDCTY YLRTGLCRFG MSCRFNHPPD RNLAIASARM KGEYPERVGQ  120
PECQYYLKTG TCKFGPTCKF HHPREKAGIA GRVQLNTLGY PLRPNEKECA YYLKTGHCKY  180
GETCKFHHPE VFNAVASSPS RGSPIYPSVH SSARAGPHSY TGTIASWAFP RASFIPSPRW  240
QSPSNYAPMI VPQGLVQVPS WNSYPSQLQS PGAQQTYGTS QQGESSAGNQ GMLSPYRSSS  300
YPVPQYALQR ENVFPERPDQ PECQYYMKTG DCKFGVVCKF HHPRVRSLPP PDCVLSPMGL  360
PLRPGEELCK FYSRYGICKF GANCKFDHPM AAPMGVYAYG FSTSASPASA STNVPMARRL  420
LGSASGSGYT S
Cis-element ? help Back to Top
SourceLink
PlantRegMap462859180
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370350.0BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds.
GenBankJX4284670.0JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971057.10.0zinc finger CCCH domain-containing protein 12
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLK3XI360.0K3XI36_SETIT; Uncharacterized protein
STRINGSi001558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-150zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]